Evidence map›Paper›PMID 16439542›Full record

ArticleJournal of virology2006

Novel Pol II fusion promoter directs human immunodeficiency virus type 1-inducible coexpression of a short hairpin RNA and protein.

Hoshang J Unwalla, Hai-Tang Li, Ingrid Bahner, Ming-Jie Li, Donald Kohn, John J Rossi

Open access · greenAbstract read
In one paragraph

Article in Journal of virology, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
4.8field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 63 citations in OpenAlex.

  1. Article
  2. Article
  3. CRISPR-Cas13a Inhibits HIV-1 Infection.Molecular therapy. Nucleic acids · 2020
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  15. Toward a durable anti-HIV gene therapy based on RNA interference.Annals of the New York Academy of Sciences · 2009
    Review
  16. Article
  17. Article
  18. Review
  19. Lentiviral vector design for multiple shRNA expression and durable HIV-1 inhibition.Molecular therapy : the journal of the American Society of Gene Therapy · 2008
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Hoshang J UnwallaDepartment of Molecular Biology, Beckman Research Institute of the City of Hope, 1450 E. Duarte Rd., Duarte, CA 91010, USA. jrossi@coh.org
Hai-Tang Li
Ingrid Bahner
Ming-Jie Li
Donald Kohn
John J Rossi
City of Hope · USChildren's Hospital of Los Angeles · USBeckman Research Institute

Funding

COMBINATORIAL USE OF CCR5 RIBOZYMES WITH ANTI HIV1 RNASR01AI042552 · NIAID · CITY OF HOPE/BECKMAN RESEARCH INSTITUTE · PI ROSSI, JOHN JOSEPH · 1998 to 2019
$7.8M
Enhancing the Intracellular Functioning of HIV RibozymesR37AI029329 · NIAID · CITY OF HOPE/BECKMAN RESEARCH INSTITUTE · PI ROSSI, JOHN JOSEPH · 2002 to 2011
$6.7M
Expression of anti-HIV siRNA in Blood CellsR01HL074704 · NHLBI · CITY OF HOPE/BECKMAN RESEARCH INSTITUTE · PI BURNETT, JOHN CORY, ROSSI, JOHN JOSEPH · 2003 to 2015
$5.0M
YEAST SYSTEM FOR DEVELOPING ANTI-HIV-1 RIBOZYMESR01AI029329 · NIAID · LOMA LINDA UNIVERSITY · PI ROSSI, JOHN JOSEPH · 1990 to 2018
$3.9M
NHLBI NIH HHS HL074704NHLBI NIH HHS R01 HL074704NIAID NIH HHS AI29329NIAID NIH HHS AI42552NIAID NIH HHS R01 AI029329NIAID NIH HHS R01 AI042552NIAID NIH HHS R37 AI029329
6 · The paper itself

Abstract

We demonstrate a novel approach for coexpression of a short hairpin RNA (shRNA) with an open reading frame which exploits transcriptional read-through of a minimal polyadenylation signal from a Pol II promoter. We first observed efficient inducible expression of enhanced green fluorescent protein along with an anti-rev shRNA. We took advantage of this observation to test coexpression of the transdominant negative mutant (humanized) of human immunodeficiency type 1 (HIV-1) Rev (huRevM10) along with an anti-rev shRNA via an HIV-1-inducible fusion promoter. The coexpression of the shRNA and transdominant protein resulted in potent, long-term inhibition of HIV-1 gene expression and suppression of shRNA-resistant mutants. This dual expression system has broad-based potential for other shRNA applications, such as cases where simultaneous knockdown of mutant and wild-type transcripts must be accompanied by replacement of the wild-type protein.

Indexed as

Gene Expression Regulation, ViralPromoter Regions, GeneticTranscription, GeneticCell LineCloning, MolecularDNA Polymerase IIGene ExpressionGene Products, revGene Products, tatGenes, DominantGenes, ReporterGreen Fluorescent ProteinsHIV-1HIV Core Protein p24HIV Long Terminal RepeatHumansDNA Polymerase IIenhanced green fluorescent proteinGene Products, revGene Products, tatGreen Fluorescent ProteinsHIV Core Protein p24rev Gene Products, Human Immunodeficiency VirusRNA, Small Interferingtat Gene Products, Human Immunodeficiency Virus

Identifiers

PMID16439542
PMCPMC1367144
OpenAlexW2106524735

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.