Evidence map›Paper›PMID 16439423›Full record

ArticleThe Journal of physiology2006

Concanavalin-A reports agonist-induced conformational changes in the intact GluR6 kainate receptor.

Anne-Marie L Fay, Derek Bowie

Open access · greenAbstract read
In one paragraph

Article in The Journal of physiology, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
0.8field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 31 citations in OpenAlex.

  1. Article
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  13. Structure of a tetrameric galectin from Cinachyrella sp. (ball sponge).Acta crystallographica. Section D, Biological crystallography · 2012
    Article
  14. Article
  15. Cations but not anions regulate the responsiveness of kainate receptors.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2011
    Article
  16. Review
  17. Na+/Cl- dipole couples agonist binding to kainate receptor activation.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2007
    Article
  18. Interface interactions modulating desensitization of the kainate-selective ionotropic glutamate receptor subunit GluR6.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2006
    Article
  19. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Anne-Marie L FayDepartment of Pharmacology and Therapeutics, McIntyre Medical Sciences Building, Room 1317, McGill University, 3655 Promenade Sir William Osler, Montreal, Québec, Canada.
Derek Bowie
McGill University · CA

Funding

Properties of AMPA and Kainate receptorsR01MH062144 · NIMH · EMORY UNIVERSITY · PI IUVONE, P. MICHAEL · 2001 to 2005
$1.2M
NIMH NIH HHS R01 MH062144NIMH NIH HHS R01 MH62144
6 · The paper itself

Abstract

The agonist-binding domain of ionotropic glutamate receptors (iGluRs) has recently been crystallized as two polypeptide chains with a linker region. Although work on the structure of this isolated ligand-binding core has been invaluable, there is debate over how it relates to conformations adopted by intact receptors. iGluR crystals are proposed to represent the activated state as their degree of domain closure correlates well with agonist efficacy. However, iGluR crystals exhibit high agonist affinity that more closely matches that of desensitized receptors. Consequently, conformations adopted by iGluR crystals may represent this state. To test this, we have employed the plant lectin, concanavalin-A (Con-A) to report conformational changes elicited by kainate (KA) iGluR agonists during desensitization. When GluR6 KA receptors (KARs) were pre-incubated with Con-A, equilibrium responses evoked by the full agonist, l-glutamate (l-Glu), increased almost 30-fold. However, in the continued presence of l-Glu, Con-A exerted no effect suggesting that it has restricted access to its binding sites when the agonist is bound. However, Con-A does not discriminate well between agonist-bound or -unbound states with the weak partial agonist, domoate. Accessibility experiments with KA were intermediate in nature consistent with its equilibrium efficacy at GluR6 KARs. Our results suggest that full and partial agonists elicit distinct conformational changes in KARs during desensitization. This finding can be reconciled with crystallographic data if the agonist-binding domain adopts the same conformation in the activated and desensitized states. However, other interpretations are possible suggesting future work is required if this issue is to be resolved.

Indexed as

Binding SitesCell LineConcanavalin AGluK2 Kainate ReceptorGlutamic AcidHumansIon Channel GatingKainic Acid ReceptorsKidneyMembrane PotentialsProtein BindingProtein ConformationStructure-Activity RelationshipConcanavalin AGluK2 Kainate ReceptorGlutamic AcidKainic Acid Receptors

Identifiers

PMID16439423
PMCPMC1779634
OpenAlexW2121809806

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.