Evidence map›Paper›PMID 16436643›Full record

ArticleThe Journal of molecular diagnostics : JMD2006

A haplotype framework for cystic fibrosis mutations in Iran.

Elahe Elahi, Ahmad Khodadad, Ilya Kupershmidt, Fereshteh Ghasemi, Babak Alinasab, Ramin Naghizadeh, Robert G Eason, Mahshid Amini, Mehran Esmaili, Mohammad R Esmaeili Dooki and 4 more

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of molecular diagnostics : JMD, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.3field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 39 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Deep resequencing ofHuman genome variation · 2016
    Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Journal of reproduction & infertility
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 7 institutions in 2 countries.

Elahe ElahiDepartment of Biological Sciences, Tehran University, Tehran, Iran.
Ahmad Khodadad
Ilya Kupershmidt
Fereshteh Ghasemi
Babak Alinasab
Ramin Naghizadeh
Robert G Eason
Mahshid Amini
Mehran Esmaili
Mohammad R Esmaeili Dooki
Mohammad H Sanati
Ronald W Davis
Mostafa Ronaghi
Yvonne R Thorstenson
Stanford University · USUniversity of Tehran · IRNational Institute of Genetic Engineering and Biotechnology · IRBabol University of Medical Sciences · IRIsfahan University of Medical Sciences · IRShahid Beheshti University · IRSilicon Labs (United States) · US

Funding

WHOLE YEAST GENOME TRANSCRIPTIONAL AND FUNCTIONAL GENE MAPS--A FEASIBILITY STUDYP01HG000205 · NHGRI · STANFORD UNIVERSITY · PI DAVIS, RONALD WAYNE, HOWE, ROGER THOMAS · 1990 to 2016
$120.9M
NHGRI NIH HHS 5P01HG00205NHGRI NIH HHS P01 HG000205
6 · The paper itself

Abstract

This is the first comprehensive profile of cystic fibrosis transmembrane conductance regulator (CFTR) mutations and their corresponding haplotypes in the Iranian population. All of the 27 CFTR exons of 60 unrelated Iranian CF patients were sequenced to identify disease-causing mutations. Eleven core haplotypes of CFTR were identified by genotyping six high-frequency simple nucleotide polymorphisms. The carrier frequency of 2.5 in 100 (1 in 40) was estimated from the frequency of heterozygous patients and suggests that contrary to popular belief, cystic fibrosis may be a common, under-diagnosed disease in Iran. A heterogeneous mutation spectrum was observed at the CFTR locus in 60 cystic fibrosis (CF) patients from Iran. Twenty putative disease-causing mutations were identified on 64 (53%) of the 120 chromosomes. The five most common Iranian mutations together represented 37% of the expected mutated alleles. The most frequent mutation, DeltaF508 (p.F508del), represented only 16% of the expected mutated alleles. The next most frequent mutations were c.1677del2 (p.515fs) at 7.5%, c.4041C>G (p.N1303K) at 5.6%, c.2183AA>G (p.684fs) at 5%, and c.3661A>T (p.K1177X) at 2.5%. Three of the five most frequent Iranian mutations are not included in a commonly used panel of CF mutations, underscoring the importance of identifying geographic-specific mutations in this population.

Indexed as

HaplotypesMutationCystic FibrosisCystic Fibrosis Transmembrane Conductance RegulatorGene FrequencyHeterozygoteHumansIranPolymorphism, GeneticCystic Fibrosis Transmembrane Conductance Regulator

Identifiers

PMID16436643
PMCPMC1867567
OpenAlexW1971172807

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.