Evidence map›Paper›PMID 16435885›Full record

ArticlePLoS biology2006

Reconstructing an ancestral mammalian immune supercomplex from a marsupial major histocompatibility complex.

Katherine Belov, Janine E Deakin, Anthony T Papenfuss, Michelle L Baker, Sandra D Melman, Hannah V Siddle, Nicolas Gouin, David L Goode, Tobias J Sargeant, Mark D Robinson and 8 more

Open access · goldAbstract read
In one paragraph

Article in PLoS biology, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 85 papers.

0numbers the graph read from it
0cells of the map it votes in
85citing papers in PubMed
5.9field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

85 citing papers in PubMed, 162 citations in OpenAlex.

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25 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

18 authors at 8 institutions in 3 countries.

Katherine BelovCentre for Advanced Technologies in Animal Genetics and Reproduction, Faculty of Veterinary Science, The University of Sydney, Camden, Australia. kbelov@camden.usyd.edu.au
Janine E Deakin
Anthony T Papenfuss
Michelle L Baker
Sandra D Melman
Hannah V Siddle
Nicolas Gouin
David L Goode
Tobias J Sargeant
Mark D Robinson
Matthew J Wakefield
Shaun Mahony
Joseph G R Cross
Panayiotis V Benos
Paul B Samollow
Terence P Speed
Jennifer A Marshall Graves
Robert D Miller
Walter and Eliza Hall Institute of Medical Research · AUAustralian National University · AUUniversity of New Mexico · USUniversity of Sydney · AUOllscoil na Gaillimhe – University of Galway · IETexas A&M University · USTexas Biomedical Research Institute · USUniversity of Pittsburgh · US

Funding

GENOMIC RESOURCE DEVELOPMENT IN THE LABORATORY OPOSSUMR24RR014214 · NCRR · TEXAS A&M UNIVERSITY SYSTEM · PI SAMOLLOW, PAUL B · 2001 to 2009
$2.9M
NCRR NIH HHS R24 RR014214
6 · The paper itself

Abstract

The first sequenced marsupial genome promises to reveal unparalleled insights into mammalian evolution. We have used the Monodelphis domestica (gray short-tailed opossum) sequence to construct the first map of a marsupial major histocompatibility complex (MHC). The MHC is the most gene-dense region of the mammalian genome and is critical to immunity and reproductive success. The marsupial MHC bridges the phylogenetic gap between the complex MHC of eutherian mammals and the minimal essential MHC of birds. Here we show that the opossum MHC is gene dense and complex, as in humans, but shares more organizational features with non-mammals. The Class I genes have amplified within the Class II region, resulting in a unique Class I/II region. We present a model of the organization of the MHC in ancestral mammals and its elaboration during mammalian evolution. The opossum genome, together with other extant genomes, reveals the existence of an ancestral "immune supercomplex" that contained genes of both types of natural killer receptors together with antigen processing genes and MHC genes.

Indexed as

Evolution, MolecularAnimalsChromosomesGene ExpressionHumansIn Situ HybridizationMajor Histocompatibility ComplexMarsupialiaMetaphaseModels, GeneticMolecular Sequence DataPhylogenyRNA, MessengerRNA, Messenger

Identifiers

PMID16435885
PMCPMC1351924
OpenAlexW2024392088

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.