Evidence map›Paper›PMID 16431984›Full record

ArticleRNA (New York, N.Y.)2006

Evolutionary specialization of recoding: frameshifting in the expression of S. cerevisiae antizyme mRNA is via an atypical antizyme shift site but is still +1.

Ivaylo P Ivanov, Raymond F Gesteland, John F Atkins

Open access · bronzeAbstract readComparative StudyLetter
In one paragraph

Article in RNA (New York, N.Y.), 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.8field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 23 citations in OpenAlex.

  1. Article
  2. Phenotypic mutations contribute to protein diversity and shape protein evolution.Protein science : a publication of the Protein Society · 2022
    Review
  3. Article
  4. Roles of polyamines in translation.The Journal of biological chemistry · 2018
    Review
  5. Review
  6. Stress and polyamine metabolism in fungi.Frontiers in chemistry · 2013
    Review
  7. Article
  8. Article
  9. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 2 countries.

Ivaylo P Ivanov
Raymond F Gesteland
John F Atkins
University of Utah · US

Funding

RECODING--DYNAMIC REPROGRAMMING OF GENETIC READOUTR01GM048152 · NIGMS · UNIVERSITY OF UTAH · PI ATKINS, JOHN F. · 1992 to 2004
$2.1M
Roles of Recoding and Transcription SlippageR01GM071853 · NIGMS · UNIVERSITY OF UTAH · PI GESTELAND, RAYMOND F · 2004 to 2007
$1.2M
NIGMS NIH HHS GM48152NIGMS NIH HHS GM71853NIGMS NIH HHS R01 GM048152NIGMS NIH HHS R01 GM071853
6 · The paper itself

Abstract

An autoregulatory translational shift to the +1 frame is required for the expression of ornithine decarboxylase antizyme from fungi to mammals. In most eukaryotes, including all vertebrates and a majority of the studied fungi/yeast, the site on antizyme mRNA where the shift occurs is UCC-UGA. The mechanism of the frameshift on this sequence likely involves nearly universal aspects of the eukaryotic translational machinery. Nevertheless, a mammalian antizyme frameshift cassette yields predominantly -2 frameshift in Saccharomyces cerevisiae, instead of the +1 in mammals. The recently identified endogenous S. cerevisiae antizyme mRNA has an atypical shift site: UGC-GCG-UGA. It is shown here that endogenous S. cerevisiae antizyme frameshifting is +1 rather than -2. We discuss how antizyme frameshifting in budding yeasts exploits peculiarities of their tRNA balance, and relate this to prior studies on Ty frameshifting.

Indexed as

Frameshifting, RibosomalAnimalsBase SequenceConserved SequenceFungiMammalsMass SpectrometryMolecular Sequence DataOrnithine Decarboxylase InhibitorsProteinsRNA, FungalRNA, MessengerSaccharomycesSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsSequence Homology, Nucleic Acidornithine decarboxylase antizymeOrnithine Decarboxylase InhibitorsProteinsRNA, FungalRNA, MessengerSaccharomyces cerevisiae Proteins

Identifiers

PMID16431984
PMCPMC1383572
OpenAlexW2167487505

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.