Evidence map›Paper›PMID 16429232›Full record

ArticleJournal of human genetics2006

Expression of the Snurf-Snrpn IC transcript in the oocyte and its putative role in the imprinting establishment of the mouse 7C imprinting domain.

Christophe K Mapendano, Tatsuya Kishino, Kazumi Miyazaki, Shinji Kondo, Koh-Ichiro Yoshiura, Yoshitaka Hishikawa, Takehiko Koji, Norio Niikawa, Tohru Ohta

Open access · bronzeAbstract read
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In one paragraph

Article in Journal of human genetics, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
2.3field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 26 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Angelman syndrome imprinting center encodes a transcriptional promoter.Proceedings of the National Academy of Sciences of the United States of America · 2015
    Article
  7. New insights into establishment and maintenance of DNA methylation imprints in mammals.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2013
    Review
  8. Genomic imprinting: recognition and marking of imprinted loci.Current opinion in genetics & development · 2012
    Review
  9. Article
  10. Article
  11. Article
  12. Protein-binding elements establish in the oocyte the primary imprint of the Prader-Willi/Angelman syndromes domain.Proceedings of the National Academy of Sciences of the United States of America · 2009
    Article
  13. Article
  14. Article
  15. A targeted deletion upstream of Snrpn does not result in an imprinting defect.Mammalian genome : official journal of the International Mammalian Genome Society · 2007
    Article
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Christophe K MapendanoDepartment of Human Genetics, Graduate School of Biomedical Sciences, Nagasaki University, Nagasaki, Japan.
Tatsuya KishinoCREST, Japan Science and Technology Agency, Kawaguchi, Japan.
Kazumi MiyazakiCREST, Japan Science and Technology Agency, Kawaguchi, Japan.
Shinji KondoCREST, Japan Science and Technology Agency, Kawaguchi, Japan.
Koh-Ichiro YoshiuraDepartment of Human Genetics, Graduate School of Biomedical Sciences, Nagasaki University, Nagasaki, Japan.
Yoshitaka HishikawaDepartment of Histology and Cell Biology, Graduate School of Biomedical Sciences, Nagasaki University, Nagasaki, Japan.
Takehiko KojiDepartment of Histology and Cell Biology, Graduate School of Biomedical Sciences, Nagasaki University, Nagasaki, Japan.
Norio NiikawaDepartment of Human Genetics, Graduate School of Biomedical Sciences, Nagasaki University, Nagasaki, Japan.
Tohru OhtaCREST, Japan Science and Technology Agency, Kawaguchi, Japan. ohta@hoku-iryo-u.ac.jp.
Nagasaki University · JPJapan Science and Technology Agency · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The human chromosome 15q11-q13, or mouse chromosome 7C, is an imprinting domain controlled by bipartite imprinting centers (ICs): Prader-Willi syndrome (PWS)-IC and Angelman syndrome (AS)-IC. PWS-IC functions to maintain the paternal epigenotype on the paternal chromosome in somatic cells, while AS-IC plays a role in the establishment of the maternal epigenetic mark at PWS-IC in the female germline or early embryos. Several alternative exons and promoters of Snurf-Snrpn (SNRPN upstream reading frame-small nuclear ribonucleoprotein polypeptide N) are expressed as "IC transcripts". Previous studies have shown that IC-transcript expression is restricted to the brain. We studied expression of the mouse IC-transcript in tissues including brain and oocytes as well as in cultured neurons and glia cells by RT-PCR and by in situ hybridization (ISH) in oocytes. The IC transcript was strongly expressed in brain (especially in neurons) and ovary (especially in oocytes and granulosa cells), while no expression was found in other tissues. This was confirmed by quantitative analysis and ISH. Expression levels in the brain were 7-fold higher compared to those in ovaries. ISH signals were observed in oocytes and granulosa cells of the secondary and developing follicles. These findings, together with previous data, suggest that the IC transcript may be associated with the establishment of PWS-IC methylation on the maternal chromosome as an AS-IC cis-acting element.

Indexed as

Genomic ImprintingAlternative SplicingAnimalsAutoantigensBase SequenceDNA PrimersFemaleIn Situ HybridizationMaleMiceNuclear ProteinsOocytesOvaryReverse Transcriptase Polymerase Chain ReactionRibonucleoproteins, Small NuclearRNA, MessengerAutoantigensDNA PrimersNuclear ProteinsRibonucleoproteins, Small NuclearRNA, MessengersnRNP Core ProteinsSNRPN protein, humanSNURF protein, mouse

Identifiers

PMID16429232
OpenAlexW2074473149

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.