Evidence map›Paper›PMID 16428774›Full record

ArticleInfection and immunity2006

Polynucleotide phosphorylase negatively controls spv virulence gene expression in Salmonella enterica.

Sofia Eriksson Ygberg, Mark O Clements, Anne Rytkönen, Arthur Thompson, David W Holden, Jay C D Hinton, Mikael Rhen

Abstract read
In one paragraph

Article in Infection and immunity, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed
12.3field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed, 67 citations in OpenAlex.

  1. Review
  2. Microorganisms · 2020
    Review
  3. Review
  4. Discovering RNA-Based Regulatory Systems forFrontiers in cellular and infection microbiology · 2018
    Review
  5. Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Review
  15. Crystallization and preliminary X-ray diffraction studies of Xanthomonas campestris PNPase in the presence of c-di-GMP.Acta crystallographica. Section F, Structural biology and crystallization communications · 2012
    Article
  16. Article
  17. Polynucleotide phosphorylase has an impact on cell biology of Campylobacter jejuni.Frontiers in cellular and infection microbiology · 2012
    Article
  18. Ribonucleases and bacterial virulence.Microbial biotechnology · 2011
    Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 5 institutions in 2 countries.

Sofia Eriksson YgbergMicrobiology and Tumor Biology Center, Karolinska Institute, Nobels väg 16, 171 77 Stockholm, Sweden.
Mark O Clements
Anne Rytkönen
Arthur Thompson
David W Holden
Jay C D Hinton
Mikael Rhen
Imperial College London · GBKarolinska Institutet · SENorwich Research Park · GBQuadram Institute · GBUniversity College London · GB

Funding

Medical Research Council G9717183
6 · The paper itself

Abstract

Mutational inactivation of the cold-shock-associated exoribonuclease polynucleotide phosphorylase (PNPase; encoded by the pnp gene) in Salmonella enterica serovar Typhimurium was previously shown to enable the bacteria to cause chronic infection and to affect the bacterial replication in BALB/c mice (M. O. Clements et al., Proc. Natl. Acad. Sci. USA 99:8784-8789, 2002). Here, we report that PNPase deficiency results in increased expression of Salmonella plasmid virulence (spv) genes under in vitro growth conditions that allow induction of spv expression. Furthermore, whole-genome microarray-based transcriptome analyses of bacteria growing inside murine macrophage-like J774.A.1 cells revealed six genes as being significantly up-regulated in the PNPase-deficient background, which included spvABC, rtcB, entC, and STM2236. Mutational inactivation of the spvR regulator diminished the increased expression of spv observed in the pnp mutant background, implying that PNPase acts upstream of or at the level of SpvR. Finally, competition experiments revealed that the growth advantage of the pnp mutant in BALB/c mice was dependent on spvR as well. Combined, our results support the idea that in S. enterica PNPase, apart from being a regulator of the cold shock response, also functions in tuning the expression of virulence genes and bacterial fitness during infection.

Indexed as

Gene Expression Regulation, BacterialAnimalsBacterial ProteinsCell LineFemaleGene Expression ProfilingMacrophagesMiceMice, Inbred BALB CMutationOligonucleotide Array Sequence AnalysisPlasmidsPolyribonucleotide NucleotidyltransferaseProteomeSalmonella typhimuriumTranscription FactorsBacterial ProteinsmkaC protein, Salmonella typhimuriumPolyribonucleotide NucleotidyltransferaseProteomeTranscription FactorsVirulence Factors

Identifiers

PMID16428774
PMCPMC1360324
OpenAlexW2119885021

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.