Evidence map›Paper›PMID 16428772›Full record

ArticleInfection and immunity2006

Identification of amino acid residues involved in heme binding and hemoprotein utilization in the Porphyromonas gingivalis heme receptor HmuR.

Xinyan Liu, Teresa Olczak, Hwai-Chen Guo, Dabney W Dixon, Caroline Attardo Genco

Open access · greenAbstract read
In one paragraph

Article in Infection and immunity, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
2.7field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 66 citations in OpenAlex.

  1. Review
  2. Chaperone-assisted cryo-EM structure ofbioRxiv : the preprint server for biology · 2024
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  5. Review
  6. Article
  7. TrkA serves as a virulence modulator inFrontiers in cellular and infection microbiology · 2022
    Article
  8. Glycation of Host Proteins Increases Pathogenic Potential ofInternational journal of molecular sciences · 2021
    Article
  9. Review
  10. Bioscience reports · 2018
    Article
  11. Article
  12. Heme uptake in bacterial pathogens.Current opinion in chemical biology · 2014
    Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. Role and regulation of heme iron acquisition in gram-negative pathogens.Frontiers in cellular and infection microbiology · 2013
    Review
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 2 countries.

Xinyan LiuDepartment of Medicine, Section of Infectious Diseases, Boston University School of Medicine, 650 Albany St., Boston, MA 02118, USA.
Teresa Olczak
Hwai-Chen Guo
Dabney W Dixon
Caroline Attardo Genco
Boston University · USGeorgia State University · USUniversity of Wrocław · PL

Funding

VIRUCIDAL AND BACTERICIDAL PORPHYRINS--SYNTHETIC, MOLECULAR, ANALYTICAL STUDIESP01AI045883 · NIAID · EMORY UNIVERSITY · PI COMPANS, RICHARD W · 1999 to 2003
$3.6M
IRON UTILIZATION BY BACTEROIDES GINGIVALISR01DE009161 · NIDCR · MOREHOUSE SCHOOL OF MEDICINE · PI GENCO, CAROLINE A · 1991 to 2005
$1.3M
NIAID NIH HHS AI45883NIAID NIH HHS P01 AI045883NIDCR NIH HHS DE09161NIDCR NIH HHS R01 DE009161PHS HHS 3 P05A 113 24
6 · The paper itself

Abstract

We have previously identified and characterized a heme/hemoglobin receptor, HmuR, in Porphyromonas gingivalis. To analyze the conserved amino acid residues of HmuR that may be involved in hemin/hemoprotein binding and utilization, we constructed a series of P. gingivalis A7436 hmuR mutants with amino acid replacements and characterized the ability of these mutants to utilize hemin and hemoproteins. Site-directed mutagenesis was employed to introduce mutations H95A, H434A, H95A-H434A, YRAP420-423YAAA, and NPDL442-445NAAA into HmuR in both P. gingivalis and Escherichia coli. Point mutations at H95 and H434 and in the NPDL motif of HmuR resulted in decreased binding to hemin, hemoglobin, and human serum albumin-hemin complex. Notably, mutations of these conserved sites and motifs led to reduced growth of P. gingivalis when human serum was used as the heme source. Analysis using a three-dimensional homology model of HmuR indicated that H95, H434, and the NPDL motif are present on apical or extracellular loops of HmuR, while the YRAP motif is present on the barrel wall. Taken together, these results support a role for H95, H434, and the NPDL motif of the P. gingivalis HmuR protein in heme binding and utilization of serum hemoproteins and the HmuR YRAP motif in serum hemoprotein utilization.

Indexed as

Amino Acid MotifsAmino Acid SequenceEscherichia coliHemeproteinsHeminHumansModels, MolecularMolecular Sequence DataMutagenesis, Site-DirectedPoint MutationPorphyromonas gingivalisReceptors, Cell SurfaceHemeproteinsheme receptorHeminReceptors, Cell Surface

Identifiers

PMID16428772
PMCPMC1360300
OpenAlexW2121491059

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.