Evidence map›Paper›PMID 16428444›Full record

ArticleMolecular and cellular biology2006

Mxr1p, a key regulator of the methanol utilization pathway and peroxisomal genes in Pichia pastoris.

Geoffrey Paul Lin-Cereghino, Laurie Godfrey, Bernard J de la Cruz, Sabrina Johnson, Samone Khuongsathiene, Ilya Tolstorukov, Mingda Yan, Joan Lin-Cereghino, Marten Veenhuis, Suresh Subramani and 1 more

Open access · greenAbstract read
In one paragraph

Article in Molecular and cellular biology, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 72 papers.

0numbers the graph read from it
0cells of the map it votes in
72citing papers in PubMed
2.3field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

72 citing papers in PubMed, 169 citations in OpenAlex.

  1. Article
  2. Article
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  4. Article
  5. Yeast Midas' touch: recent advances in the valorisation of methanol by yeasts.World journal of microbiology & biotechnology · 2025
    Review
  6. Article
  7. Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. Article
  13. Methanol biotransformation toward high-level production of fatty acid derivatives by engineering the industrial yeastProceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Engineering of Promoters for Gene Expression in Pichia pastoris.Methods in molecular biology (Clifton, N.J.) · 2022
    Article
  19. Review
  20. Article

12 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 2 countries.

Geoffrey Paul Lin-CereghinoDepartment of Biochemistry and Molecular Biology, Oregon Graduate Institute of Science and Technology, 2000 N.W. Walker Road, Beaverton, Oregon 97006, USA.
Laurie Godfrey
Bernard J de la Cruz
Sabrina Johnson
Samone Khuongsathiene
Ilya Tolstorukov
Mingda Yan
Joan Lin-Cereghino
Marten Veenhuis
Suresh Subramani
James M Cregg
Oregon Institute of Technology · USKeck Graduate Institute · USUniversity of San Diego · USUniversity of Groningen · NL

Funding

TARGETING OF PROTEINS INTO PEROXISOMESR01DK041737 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI AITCHISON, JOHN D., SUBRAMANI, SURESH · 1990 to 2025
$8.4M
Targeting of proteins into peroxisomesR37DK041737 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI SUBRAMANI, SURESH · 2004 to 2013
$5.3M
Novel peroxisomal genes in the yeast Pichia pastorisR21DK067371 · NIDDK · KECK GRADUATE INST OF APPLIED LIFE SCIS · PI CREGG, JAMES MICHAEL · 2004 to 2005
$296k
PEROXISOME BIOGENESIS IN YEASTR01DK043698 · NIDDK · OREGON HEALTH AND SCIENCE UNIVERSITY · PI CREGG, JAMES MICHAEL · 1992 to 2000
$231k
Targeting of Proteins into PeroxisomesR56DK041737 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI SUBRAMANI, SURESH · 2014 to 2014
$149k
REGULATION OF MAGANESE PEROXIDASE GENE EXPRESSIONF32ES005759 · NIEHS · OREGON HEALTH AND SCIENCE UNIVERSITY · PI CEREGHINO, GEOFFREY P · 1997 to 1998
–
NIDDK NIH HHS DK41737NIDDK NIH HHS DK43698NIDDK NIH HHS DK67371NIDDK NIH HHS R01 DK041737NIDDK NIH HHS R21 DK067371NIDDK NIH HHS R37 DK041737NIDDK NIH HHS R56 DK041737NIEHS NIH HHS ES05759NIEHS NIH HHS F32 ES005759
6 · The paper itself

Abstract

Growth of the yeast Pichia pastoris on methanol induces the expression of genes whose products are required for its metabolism. Three of the methanol pathway enzymes are located in an organelle called the peroxisome. As a result, both methanol pathway enzymes and proteins involved in peroxisome biogenesis (PEX proteins) are induced in response to this substrate. The most highly regulated of these genes is AOX1, which encodes alcohol oxidase, the first enzyme of the methanol pathway, and a peroxisomal enzyme. To elucidate the molecular mechanisms responsible for methanol regulation, we identify genes required for the expression of AOX1. Mutations in one gene, named MXR1 (methanol expression regulator 1), result in strains that are unable to (i) grow on the peroxisomal substrates methanol and oleic acid, (ii) induce the transcription of AOX1 and other methanol pathway and PEX genes, and (iii) form normal-appearing peroxisomes in response to methanol. MXR1 encodes a large protein with a zinc finger DNA-binding domain near its N terminus that has similarity to Saccharomyces cerevisiae Adr1p. In addition, Mxr1p is localized to the nucleus in cells grown on methanol or other gluconeogenic substrates. Finally, Mxr1p specifically binds to sequences upstream of AOX1. We conclude that Mxr1p is a transcription factor that is necessary for the activation of many genes in response to methanol. We propose that MXR1 is the P. pastoris homologue of S. cerevisiae ADR1 but that it has gained new functions and lost others through evolution as a result of changes in the spectrum of genes that it controls.

Indexed as

Gene Expression Regulation, FungalAlcohol OxidoreductasesAmino Acid SequenceCell NucleusCloning, MolecularFungal ProteinsGenes, FungalMethanolMolecular Sequence DataOleic AcidPeroxisomesPichiaPromoter Regions, GeneticTrans-Activatorsalcohol oxidaseAlcohol OxidoreductasesFungal ProteinsMethanolOleic AcidTrans-Activators

Identifiers

PMID16428444
PMCPMC1347016
OpenAlexW2101678382

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.