Evidence map›Paper›PMID 16428437›Full record

ArticleMolecular and cellular biology2006

E2A and IRF-4/Pip promote chromatin modification and transcription of the immunoglobulin kappa locus in pre-B cells.

Adam S Lazorchak, Mark S Schlissel, Yuan Zhuang

Open access · greenAbstract read
In one paragraph

Article in Molecular and cellular biology, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed
2.3field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed, 66 citations in OpenAlex.

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  13. E proteins in lymphocyte development and lymphoid diseases.Current topics in developmental biology · 2014
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 3 institutions in 1 country.

Adam S LazorchakDepartment of Immunology, Duke University Medical Center, Box 3010, 328 Jones Building, Research Drive, Durham, NC 27710, USA.
Mark S Schlissel
Yuan Zhuang
Duke Medical Center · USDuke University Hospital · USUniversity of California, Berkeley · US

Funding

The Regulation of B Lymphocyte DevelopmentR01HL048702 · NHLBI · UNIVERSITY OF CALIFORNIA BERKELEY · PI SCHLISSEL, MARK S. · 1994 to 2011
$4.1M
UBIQUITIN-DEPENDENT PROTEOLYSIS--SPECIFICITY/MECHANISMR01GM030308 · NIGMS · EMORY UNIVERSITY · PI WILKINSON, KEITH D · 1985 to 2010
$3.9M
Biochemistry and Regulation of V(D)J RecombinationR37AI040227 · NIAID · UNIVERSITY OF CALIFORNIA BERKELEY · PI SCHLISSEL, MARK S. · 2005 to 2012
$3.0M
FUNCTIONS OF E2A IN B LYMPHOCYTE DEVELOPMENTR01CA072433 · NCI · DUKE UNIVERSITY · PI ZHUANG, YUAN · 1997 to 2009
$2.9M
BIOCHEMISTRY AND REGULATION OF V(D)J RECOMBINATIONR01AI040227 · NIAID · UNIVERSITY OF CALIFORNIA BERKELEY · PI SCHLISSEL, MARK S. · 1996 to 2004
$1.5M
NCI NIH HHS R01 CA072433NHLBI NIH HHS R01 HL048702NIAID NIH HHS R01 AI040227NIAID NIH HHS R37 AI040227NIGMS NIH HHS R01-GM30308
6 · The paper itself

Abstract

The immunoglobulin kappa light chain (Igkappa) locus is regulated in a lineage- and stage-specific manner during B-cell development. The highly restricted timing of V to J gene recombination at the pre-B-cell stage is under the control of two enhancers, the intronic enhancer (kappaEi) and the 3' enhancer (kappaE3'), flanking the constant exon. E2A transcription factors have been indicated to be directly involved in the regulation of Igkappa locus activation. In this study, we utilize E2A-deficient pre-B cells to directly investigate the mechanism of E2A-mediated Igkappa activation. We demonstrate that Igkappa germ line transcription is severely impaired and recombination is blocked in the absence of E2A. Reconstitution of E2A-/- pre-B cells with inducible human E2A (E47R) is sufficient to promote chromatin modification of Igkappa and rescue Igkappa germ line transcription and Jkappa gene recombinase accessibility. Furthermore, we show that increased E2A recruitment to kappaEi and kappaE3' correlates with activation of Igkappa in pre-B cells and that recruitment of E2A to kappaE3' is in part dependent on the transcription factor IRF-4. Inhibition of IRF-4 expression in pre-B cells leads to a significant reduction of Igkappa germ line transcription and enhancer acetylation. In the absence of E2A, increased IRF-4 expression is not sufficient to promote Igkappa enhancer chromatin modification or transcription, suggesting that the sequential involvement of IRF-4 and E2A is necessary for the activation of the Igkappa locus. Finally, we provide genetic evidence in the mouse that E2A gene dosage can influence the development of pre-B cells during the phase of Igkappa gene activation.

Indexed as

Gene Rearrangement, B-Lymphocyte, Light ChainAcetylationAnimalsBasic Helix-Loop-Helix ProteinsBenzamidesB-LymphocytesCell DifferentiationChromatinEnhancer Elements, GeneticGene DosageGerm CellsHistonesHumansImatinib MesylateImmunoglobulin kappa-ChainsInterferon Regulatory Factor-4Basic Helix-Loop-Helix ProteinsBenzamidesChromatinHistonesImatinib MesylateImmunoglobulin kappa-ChainsInterferon Regulatory Factor-4Interferon Regulatory FactorsPiperazinesProtein Kinase InhibitorsPyrimidinesTcf3 protein, mouse

Identifiers

PMID16428437
PMCPMC1347029
OpenAlexW2119683457

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.