Evidence map›Paper›PMID 16428409›Full record

ArticleJournal of bacteriology2006

Identification and characterization of RbmA, a novel protein required for the development of rugose colony morphology and biofilm structure in Vibrio cholerae.

Jiunn C N Fong, Kevin Karplus, Gary K Schoolnik, Fitnat H Yildiz

Open access · bronzeAbstract read
In one paragraph

Article in Journal of bacteriology, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 108 papers.

0numbers the graph read from it
0cells of the map it votes in
108citing papers in PubMed
2.4field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

108 citing papers in PubMed, 153 citations in OpenAlex.

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  17. A peptide-binding domain shared with an Antarctic bacterium facilitatesProceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  18. Review
  19. Article
  20. Article

48 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Jiunn C N FongDepartment of Environmental Toxicology, University of California, Santa Cruz, Santa Cruz, CA 95064, USA.
Kevin Karplus
Gary K Schoolnik
Fitnat H Yildiz
Stanford University · USUniversity of California, Santa Cruz · US

Funding

Smooth to Rugose phase variation in Vibrio choleraeR01AI055987 · NIAID · UNIVERSITY OF CALIFORNIA SANTA CRUZ · PI YILDIZ, HAVVA FITNAT · 2003 to 2019
$4.4M
Combined Methods for Protein-Structure PredictionR01GM068570 · NIGMS · UNIVERSITY OF CALIFORNIA SANTA CRUZ · PI KARPLUS, KEVIN · 2003 to 2007
$1.1M
Smooth to Rugose phase variation in Vibrio choleraeR56AI055987 · NIAID · UNIVERSITY OF CALIFORNIA SANTA CRUZ · PI YILDIZ, HAVVA FITNAT · 2008 to 2008
$356k
NIAID NIH HHS AI055987NIAID NIH HHS R01 AI055987NIAID NIH HHS R56 AI055987NIGMS NIH HHS GM068570-01NIGMS NIH HHS R01 GM068570
6 · The paper itself

Abstract

Phase variation between smooth and rugose colony variants of Vibrio cholerae is predicted to be important for the pathogen's survival in its natural aquatic ecosystems. The rugose variant forms corrugated colonies, exhibits increased levels of resistance to osmotic, acid, and oxidative stresses, and has an enhanced capacity to form biofilms. Many of these phenotypes are mediated in part by increased production of an exopolysaccharide termed VPS. In this study, we compared total protein profiles of the smooth and rugose variants using two-dimensional gel electrophoresis and identified one protein that is present at a higher level in the rugose variant. A mutation in the gene encoding this protein, which does not have any known homologs in the protein databases, causes cells to form biofilms that are more fragile and sensitive to sodium dodecyl sulfate than wild-type biofilms. The results indicate that the gene, termed rbmA (rugosity and biofilm structure modulator A), is required for rugose colony formation and biofilm structure integrity in V. cholerae. Transcription of rbmA is positively regulated by the response regulator VpsR but not VpsT.

Indexed as

Bacterial ProteinsBiofilmsGene Expression Regulation, BacterialGenes, RegulatorPolysaccharides, BacterialVibrio choleraeBacterial ProteinsPolysaccharides, BacterialVpsR protein, Vibrio cholerae

Identifiers

PMID16428409
PMCPMC1347326
OpenAlexW2128879347

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.