Evidence map›Paper›PMID 16428395›Full record

ArticleJournal of bacteriology2006

Arginine-dependent gene regulation via the ArgR repressor is species specific in chlamydia.

Chris S Schaumburg, Ming Tan

Open access · greenAbstract read
In one paragraph

Article in Journal of bacteriology, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
2.1field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 25 citations in OpenAlex.

  1. Molecular pathogenesis ofFrontiers in cellular and infection microbiology · 2023
    Review
  2. Article
  3. Article
  4. The Repressor Function of theJournal of bacteriology · 2020
    Article
  5. Ironing Out the Unconventional Mechanisms of Iron Acquisition and Gene Regulation inFrontiers in cellular and infection microbiology · 2017
    Review
  6. Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Chris S SchaumburgDepartment of Microbiology and Molecular Genetics, B240 Med Sci I, University of California, Irvine, CA 92697-4025, USA.
Ming Tan
University of California, Irvine · US

Funding

The Regulation of gene expression in ChlamydiaR01AI044198 · NIAID · UNIVERSITY OF CALIFORNIA-IRVINE · PI TAN, MING · 1999 to 2021
$7.1M
Molecular mechanisms of gene regulation in ChlamydiaK02AI057563 · NIAID · UNIVERSITY OF CALIFORNIA-IRVINE · PI TAN, MING · 2004 to 2008
$474k
Mechanisms of temporal gene regulation in ChlamydiaR56AI044198 · NIAID · UNIVERSITY OF CALIFORNIA-IRVINE · PI TAN, MING · 2010 to 2010
$383k
NIAID NIH HHS AI 057563NIAID NIH HHS AI 44198NIAID NIH HHS K02 AI057563NIAID NIH HHS R01 AI044198NIAID NIH HHS R56 AI044198
6 · The paper itself

Abstract

Some, but not all, Chlamydia spp. are predicted to encode a homolog of ArgR, a master regulatory molecule that modulates arginine biosynthesis and catabolism in bacteria in response to intracellular arginine levels. While genes for arginine biosynthesis are apparently missing in Chlamydia, a putative arginine transport system encoded by glnP, glnQ, and artJ is present. We found that recombinant Chlamydia pneumoniae ArgR functions as an arginine-dependent aporepressor that bound specifically to operator sequences upstream of the glnPQ operon. ArgR was able to repress transcription in a promoter-specific manner that was dependent on the concentration of the corepressor l-arginine. We were able to locate ArgR operators upstream of glnPQ in C. pneumoniae and Chlamydophila caviae but not Chlamydia trachomatis, which corresponded to the predicted presence or absence of ArgR in these chlamydial species. Our findings indicate that only some members of the family Chlamydiaceae have an arginine-responsive mechanism of gene regulation that is predicted to control arginine uptake from the host cell. This is the first study to directly demonstrate a species-specific mechanism of transcriptional regulation in Chlamydia.

Indexed as

Gene Expression Regulation, BacterialArginineBacterial ProteinsChlamydiaDNA, BacterialGenes, BacterialGenes, RegulatorRepressor ProteinsSpecies SpecificityArginineArgR protein, BacteriaBacterial ProteinsDNA, BacterialRepressor Proteins

Identifiers

PMID16428395
PMCPMC1347356
OpenAlexW2150960223

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.