Evidence map›Paper›PMID 16424920›Full record

ArticlePLoS pathogens2006

Plant and animal pathogen recognition receptors signal through non-RD kinases.

Christopher Dardick, Pamela Ronald

Open access · goldAbstract read
In one paragraph

Article in PLoS pathogens, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 108 papers.

0numbers the graph read from it
0cells of the map it votes in
108citing papers in PubMed
19.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

108 citing papers in PubMed, 277 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Physiology and molecular biology of plants : an international journal of functional plant biology · 2024
    Article
  6. Article
  7. Article
  8. Use ofHeliyon · 2023
    Article
  9. Review
  10. Article
  11. Plant immunity: Rice XA21-mediated resistance to bacterial infection.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  12. Molecular evolution of theFrontiers in genetics · 2022
    Article
  13. Activation loop phosphorylation of a non-RD receptor kinase initiates plant innate immune signaling.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  14. Article
  15. Article
  16. Review
  17. ADP-heptose: a bacterial PAMP detected by the host sensor ALPK1.Cellular and molecular life sciences : CMLS · 2021
    Review
  18. Article
  19. Article
  20. ComprehensiveRSC advances · 2020
    Article

48 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 2 institutions in 1 country.

Christopher DardickAgricultural Research Service, Appalachian Fruit Research Station, United States Department of Agriculture, Kearneysville, West Virginia, USA. cdardick@afrs.ars.usda.gov
Pamela Ronald
Appalachian Fruit Research Laboratory · USUniversity of California, Davis · US

Funding

PROFESSORS OF THE FUTURE: POST DOC CAREER DEVELOPMENTK12GM000679 · NIGMS · UNIVERSITY OF CALIFORNIA DAVIS · PI HEDRICK, JERRY L · 1999 to 2006
$3.0M
NIGMS NIH HHS GM59962NIGMS NIH HHS K12 GM000679NIGMS NIH HHS K12GM00679
6 · The paper itself

Abstract

Plants and animals mediate early steps of the innate immune response through pathogen recognition receptors (PRRs). PRRs commonly associate with or contain members of a monophyletic group of kinases called the interleukin-1 receptor-associated kinase (IRAK) family that include Drosophila Pelle, human IRAKs, rice XA21 and Arabidopsis FLS2. In mammals, PRRs can also associate with members of the receptor-interacting protein (RIP) kinase family, distant relatives to the IRAK family. Some IRAK and RIP family kinases fall into a small functional class of kinases termed non-RD, many of which do not autophosphorylate the activation loop. We surveyed the yeast, fly, worm, human, Arabidopsis, and rice kinomes (3,723 kinases) and found that despite the small number of non-RD kinases in these genomes (9%-29%), 12 of 15 kinases known or predicted to function in PRR signaling fall into the non-RD class. These data indicate that kinases associated with PRRs can largely be predicted by the lack of a single conserved residue and reveal new potential plant PRR subfamilies.

Indexed as

AnimalsConserved SequenceEvolution, MolecularGenomeHumansImmunity, InnateInterleukin-1 Receptor-Associated KinasesIntracellular Signaling Peptides and ProteinsMultigene FamilyNF-kappa BOryzaPlantsProtein Serine-Threonine KinasesReceptor-Interacting Protein Serine-Threonine KinasesSignal TransductionTumor Necrosis Factor Receptor-Associated Peptides and ProteinsInterleukin-1 Receptor-Associated KinasesIntracellular Signaling Peptides and ProteinsNF-kappa BProtein Serine-Threonine KinasesReceptor-Interacting Protein Serine-Threonine KinasesRIPK1 protein, humanTumor Necrosis Factor Receptor-Associated Peptides and ProteinsVirulence Factors

Identifiers

PMID16424920
PMCPMC1331981
OpenAlexW2110216491

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.