Evidence map›Paper›PMID 16424901›Full record

ArticleThe EMBO journal2006

Iron-responsive degradation of iron-regulatory protein 1 does not require the Fe-S cluster.

Stephen L Clarke, Aparna Vasanthakumar, Sheila A Anderson, Corinne Pondarré, Cheryl M Koh, Kathryn M Deck, Joseph S Pitula, Charles J Epstein, Mark D Fleming, Richard S Eisenstein

Open access · greenAbstract read
In one paragraph

Article in The EMBO journal, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 43 papers.

0numbers the graph read from it
0cells of the map it votes in
43citing papers in PubMed
5.2field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

43 citing papers in PubMed, 95 citations in OpenAlex.

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  16. Article
  17. Protein degradation and iron homeostasis.Biochimica et biophysica acta · 2012
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 1 country.

Stephen L ClarkeDepartment of Nutritional Sciences, University of Wisconsin, Madison, WI 53706, USA.
Aparna Vasanthakumar
Sheila A Anderson
Corinne Pondarré
Cheryl M Koh
Kathryn M Deck
Joseph S Pitula
Charles J Epstein
Mark D Fleming
Richard S Eisenstein
University of Wisconsin–Madison · USBoston Children's Hospital · USUniversity of California, San Francisco · US

Funding

TRAINING IN NUTRITIONT32DK007665 · NIDDK · UNIVERSITY OF WISCONSIN-MADISON · PI GUY E GROBLEWSKI, Chi- Liang Eric Yen · 1993 to 2026
$9.2M
AGE RELATED DEGENERATIONR01AG016998 · NIA · UNIVERSITY OF CALIFORNIA SAN FRANCISCO · PI EPSTEIN, CHARLES J · 1998 to 2002
$1.9M
Sideroflexin 1 and mitochondrial iron metabolismR01DK062474 · NIDDK · CHILDREN'S HOSPITAL BOSTON · PI FLEMING, MARK D · 2002 to 2006
$1.5M
IRON METABOLISM AND PHOSPHORYLATION OF IRPS BY PKCR01DK047219 · NIDDK · UNIVERSITY OF WISCONSIN MADISON · PI EISENSTEIN, RICHARD S. · 1999 to 2002
$736k
IRON METABOLISM AND PHOSPHORYLATION OF THE IRE-BP BY PKCR29DK047219 · NIDDK · UNIVERSITY OF WISCONSIN MADISON · PI EISENSTEIN, RICHARD S. · 1994 to 1998
–
NIA NIH HHS AG16998NIDDK NIH HHS DK47219NIDDK NIH HHS DK62474NIDDK NIH HHS R01 DK062474NIDDK NIH HHS T32 DK007665NIDDK NIH HHS T32 DK07665
6 · The paper itself

Abstract

The generally accepted role of iron-regulatory protein 1 (IRP1) in orchestrating the fate of iron-regulated mRNAs depends on the interconversion of its cytosolic aconitase and RNA-binding forms through assembly/disassembly of its Fe-S cluster, without altering protein abundance. Here, we show that IRP1 protein abundance can be iron-regulated. Modulation of IRP1 abundance by iron did not require assembly of the Fe-S cluster, since a mutant with all cluster-ligating cysteines mutated to serine underwent iron-induced protein degradation. Phosphorylation of IRP1 at S138 favored the RNA-binding form and promoted iron-dependent degradation. However, phosphorylation at S138 was not required for degradation. Further, degradation of an S138 phosphomimetic mutant was not blocked by mutation of cluster-ligating cysteines. These findings were confirmed in mouse models with genetic defects in cytosolic Fe-S cluster assembly/disassembly. IRP1 RNA-binding activity was primarily regulated by IRP1 degradation in these animals. Our results reveal a mechanism for regulating IRP1 action relevant to the control of iron homeostasis during cell proliferation, inflammation, and in response to diseases altering cytosolic Fe-S cluster assembly or disassembly.

Indexed as

AnimalsCell LineHeminHumansIronIron Regulatory Protein 1MiceMice, KnockoutMutationPhosphorylationRNA-Binding ProteinsRNA, MessengerSerineHeminIronIron Regulatory Protein 1RNA-Binding ProteinsRNA, MessengerSerine

Identifiers

PMID16424901
PMCPMC1383537
OpenAlexW2137714098

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.