Evidence map›Paper›PMID 16424183›Full record

ArticleJournal of immunology (Baltimore, Md. : 1950)2006

Human alpha beta and gamma delta thymocyte development: TCR gene rearrangements, intracellular TCR beta expression, and gamma delta developmental potential--differences between men and mice.

Michelle L Joachims, Jennifer L Chain, Scott W Hooker, Christopher J Knott-Craig, Linda F Thompson

Abstract readComparative Study
In one paragraph

Article in Journal of immunology (Baltimore, Md. : 1950), 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed.

  1. Generation of effector CD4Stem cell reports · 2026
    Article
  2. Article
  3. T Cell Development: From T-Lineage Specification to Intrathymic Maturation.Advances in experimental medicine and biology · 2025
    Review
  4. CD3Frontiers in immunology · 2025
    Review
  5. Article
  6. Article
  7. The Function of Ubiquitination in T-Cell Development.Advances in experimental medicine and biology · 2024
    Review
  8. Review
  9. Article
  10. Identification and Purification of Human T Cell Precursors.Methods in molecular biology (Clifton, N.J.) · 2023
    Article
  11. Review
  12. Article
  13. Article
  14. Article
  15. Review
  16. Review
  17. Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Michelle L JoachimsImmunobiology and Cancer Program, Oklahoma Medical Research Foundation, Oklahoma City, OK 73104, USA.
Jennifer L Chain
Scott W Hooker
Christopher J Knott-Craig
Linda F Thompson

Funding

Molecular Basis of Immunity - Kirschtein-NRSAT32AI007633 · NIAID · UNIVERSITY OF OKLAHOMA HLTH SCIENCES CTR · PI CUNNINGHAM, MADELEINE W. · 2001 to 2022
$4.0M
The Regulation of Inflammatory Responses by CD73R01AI018220 · NIAID · SCRIPPS CLINIC AND RESEARCH FOUNDATION · PI THOMPSON, LINDA F · 1985 to 2012
$3.1M
MOLECULAR ASPECTS OF HUMAN LYMPHOPOIESISP01AI045864 · NIAID · OKLAHOMA MEDICAL RESEARCH FOUNDATION · PI THOMPSON, LINDA F. · 1999 to 2002
$2.5M
ADENOSINE DEAMINASE DEFICIENCYR01HD036044 · NICHD · OKLAHOMA MEDICAL RESEARCH FOUNDATION · PI THOMPSON, LINDA F. · 1998 to 2007
$1.6M
MOLECULAR EVENTS IN HUMAN GAMMA-DELTA T CELL COMMITMENTF32HD008709 · NICHD · OKLAHOMA MEDICAL RESEARCH FOUNDATION · PI JOACHIMS, MICHELLE L · 2001 to 2003
$142k
IMMUNOBIOLOGY, CANCER, AND ARTHRITIS LABORATORIESC06RR014570 · NCRR · OKLAHOMA MEDICAL RESEARCH FOUNDATION · PI CAPRA, J DONALD · 1999 to 1999
–
NCRR NIH HHS C06 RR014570NCRR NIH HHS C06 RR14570-01NIAID NIH HHS AI45864NIAID NIH HHS R01 AI018220NIAID NIH HHS T32 AI007633NICHD NIH HHS F32 HD008709NICHD NIH HHS HD36044NICHD NIH HHS R01 HD036044
6 · The paper itself

Abstract

To evaluate the role of the TCR in the alphabeta/gammadelta lineage choice during human thymocyte development, molecular analyses of the TCRbeta locus in gammadelta cells and the TCRgamma and delta loci in alphabeta cells were undertaken. TCRbeta variable gene segments remained largely in germline configuration in gammadelta cells, indicating that commitment to the gammadelta lineage occurred before complete TCRbeta rearrangements in most cases. The few TCRbeta rearrangements detected were primarily out-of-frame, suggesting that productive TCRbeta rearrangements diverted cells away from the gammadelta lineage. In contrast, in alphabeta cells, the TCRgamma locus was almost completely rearranged with a random productivity profile; the TCRdelta locus contained primarily nonproductive rearrangements. Productive gamma rearrangements were, however, depleted compared with preselected cells. Productive TCRgamma and delta rearrangements rarely occurred in the same cell, suggesting that alphabeta cells developed from cells unable to produce a functional gammadelta TCR. Intracellular TCRbeta expression correlated with the up-regulation of CD4 and concomitant down-regulation of CD34, and plateaued at the early double positive stage. Surprisingly, however, some early double positive thymocytes retained gammadelta potential in culture. We present a model for human thymopoiesis which includes gammadelta development as a default pathway, an instructional role for the TCR in the alphabeta/gammadelta lineage choice, and a prolonged developmental window for beta selection and gammadelta lineage commitment. Aspects that differ from the mouse are the status of TCR gene rearrangements at the nonexpressed loci, the timing of beta selection, and maintenance of gammadelta potential through the early double positive stage of development.

Indexed as

Gene Rearrangement, beta-Chain T-Cell Antigen ReceptorAnimalsCell CycleCell DifferentiationCell LineageChildCoculture TechniquesGene Rearrangement, alpha-Chain T-Cell Antigen ReceptorGene Rearrangement, delta-Chain T-Cell Antigen ReceptorGene Rearrangement, gamma-Chain T-Cell Antigen ReceptorHumansInfantIntracellular FluidMiceModels, ImmunologicalOrgan Culture TechniquesReceptors, Antigen, T-Cell, alpha-betaReceptors, Antigen, T-Cell, gamma-delta

Identifiers

PMID16424183
PMCPMC1592528

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.