Evidence map›Paper›PMID 16421253›Full record

ArticleMolecular biology of the cell2006

Rab1 defines a novel pathway connecting the pre-Golgi intermediate compartment with the cell periphery.

Ragna Sannerud, Michaël Marie, Clément Nizak, Hege Avsnes Dale, Karin Pernet-Gallay, Franck Perez, Bruno Goud, Jaakko Saraste

Open access · greenAbstract read
In one paragraph

Article in Molecular biology of the cell, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 64 papers.

0numbers the graph read from it
0cells of the map it votes in
64citing papers in PubMed
4.4field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

64 citing papers in PubMed, 118 citations in OpenAlex.

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  15. COVID-19 therapies: do we see substantial progress?Cellular & molecular biology letters · 2022
    Article
  16. Review
  17. Article
  18. The Golgi Apparatus and its Next-Door Neighbors.Frontiers in cell and developmental biology · 2022
    Review
  19. Article
  20. Article

4 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

Ragna SannerudSection of Anatomy and Cell Biology, Department of Biomedicine, University of Bergen, N-5009 Bergen, Norway.
Michaël Marie
Clément Nizak
Hege Avsnes Dale
Karin Pernet-Gallay
Franck Perez
Bruno Goud
Jaakko Saraste
Institut Curie · FRUniversity of Bergen · NO

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The function of the pre-Golgi intermediate compartment (IC) and its relationship with the endoplasmic reticulum (ER) and Golgi remain only partially understood. Here, we report striking segregation of IC domains in polarized PC12 cells that develop neurite-like processes. Differentiation involves expansion of the IC and movement of Rab1-containing tubules to the growth cones of the neurites, whereas p58- and COPI-positive IC elements, like rough ER and Golgi, remain in the cell body. Exclusion of Rab1 effectors p115 and GM130 from the neurites further indicated that the centrifugal, Rab1-mediated pathway has functions that are not directly related to ER-to-Golgi trafficking. Disassembly of COPI coats did not affect this pathway but resulted in missorting of p58 to the neurites. Live cell imaging showed that green fluorescent protein (GFP)-Rab1A-containing IC elements move bidirectionally both within the neurites and cell bodies, interconnecting different ER exit sites and the cis-Golgi region. Moreover, in nonpolarized cells GFP-Rab1A-positive tubules moved centrifugally towards the cell cortex. Hydroxymethylglutaryl-CoA reductase, the key enzyme of cholesterol biosynthesis, colocalized with slowly sedimenting, Rab1-enriched membranes when the IC subdomains were separated by velocity sedimentation. These results reveal a novel pathway directly connecting the IC with the cell periphery and suggest that this Rab1-mediated pathway is linked to the dynamics of smooth ER.

Indexed as

Cell CompartmentationCell PolarityAnimalsDogsEndoplasmic ReticulumEndoplasmic Reticulum Chaperone BiPGolgi ApparatusHeat-Shock ProteinsHumansMannose-Binding LectinsMembrane ProteinsMolecular ChaperonesNerve Growth FactorNeuritesNeuronsPC12 CellsEndoplasmic Reticulum Chaperone BiPHeat-Shock ProteinsHMG-CoA reductase phosphataseLman1 protein, ratMannose-Binding LectinsMembrane ProteinsMolecular ChaperonesNerve Growth FactorPhosphoprotein Phosphatasesrab1 GTP-Binding Proteins

Identifiers

PMID16421253
PMCPMC1415313
OpenAlexW2153873971

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.