Evidence map›Paper›PMID 16420365›Full record

ArticleMolecular microbiology2006

Clonal analysis reveals high rate of structural mutations in fimbrial adhesins of extraintestinal pathogenic Escherichia coli.

Scott J Weissman, Sujay Chattopadhyay, Pavel Aprikian, Mana Obata-Yasuoka, Yuliya Yarova-Yarovaya, Ann Stapleton, William Ba-Thein, Daniel Dykhuizen, James R Johnson, Evgeni V Sokurenko

Open access · greenAbstract read
In one paragraph

Article in Molecular microbiology, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 52 papers.

0numbers the graph read from it
0cells of the map it votes in
52citing papers in PubMed
4.6field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

52 citing papers in PubMed, 88 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Review
  8. Article
  9. Article
  10. Review
  11. Article
  12. CRISPRi Induced Suppression of Fimbriae Gene (Frontiers in immunology · 2017
    Article
  13. Article
  14. Article
  15. Article
  16. Inactive conformation enhances binding function in physiological conditions.Proceedings of the National Academy of Sciences of the United States of America · 2015
    Article
  17. Impermanence of bacterial clones.Proceedings of the National Academy of Sciences of the United States of America · 2015
    Article
  18. Escherichia coli ST131, an intriguing clonal group.Clinical microbiology reviews · 2014
    Review
  19. Positively selected FimH residues enhance virulence during urinary tract infection by altering FimH conformation.Proceedings of the National Academy of Sciences of the United States of America · 2013
    Article
  20. Allosteric coupling in the bacterial adhesive protein FimH.The Journal of biological chemistry · 2013
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Scott J WeissmanDivision of Infectious Disease, Immunology and Rheumatology, Department of Pediatrics, University of Washington, Seattle, WA, USA.
Sujay Chattopadhyay
Pavel Aprikian
Mana Obata-Yasuoka
Yuliya Yarova-Yarovaya
Ann Stapleton
William Ba-Thein
Daniel Dykhuizen
James R Johnson
Evgeni V Sokurenko
University of Washington · USUniversity of Minnesota · US

Funding

Prevention of UTI With A Vaginal ProbioticP01DK053369 · NIDDK · UNIVERSITY OF WASHINGTON · PI STAPLETON, ANN E · 1998 to 2007
$8.5M
AN EVOLUTIONARY ANALYSIS OF FIMBRIAE IN ENTEROBACTERIAR01GM060731 · NIGMS · UNIVERSITY OF LOUISVILLE · PI DYKHUIZEN, DANIEL E. · 2000 to 2007
$2.6M
Probiotic Lactobacilli and Vaginal EpitheliumR01DK070906 · NIDDK · UNIVERSITY OF WASHINGTON · PI STAPLETON, ANN E · 2005 to 2007
$664k
Type 1 fimbrial variation in E coil 018 k1 h7 virulenceK08AI057737 · NIAID · SEATTLE CHILDREN'S HOSPITAL · PI WEISSMAN, SCOTT J · 2004 to 2008
$581k
NIAID NIH HHS K08 AI057737NIAID NIH HHS L40 AI057547NIDDK NIH HHS P01 DK053369NIDDK NIH HHS R01 DK070906NIGMS NIH HHS R01 GM060731
6 · The paper itself

Abstract

Type 1 fimbriae of Escherichia coli mediate mannose-specific adhesion to host epithelial surfaces and consist of a major, antigenically variable pilin subunit, FimA, and a minor, structurally conserved adhesive subunit, FimH, located on the fimbrial tip. We have analysed the variability of fimA and fimH in strains of vaginal and other origin that belong to one of the most prominent clonal groups of extraintestinal pathogenic E. coli, comprised of O1:K1-, O2:K1- and O18:K1-based serotypes. Multiple locus sequence typing (MLST) of this group revealed that the strains have identical (at all but one nucleotide position) eight housekeeping loci around the genome and belong to the ST95 complex defined by the publicly available E. coli MLST database. Multiple highly diverse fimA alleles have been introduced into the ST95 clonal complex via horizontal transfer, at a frequency comparable to that of genes defining the major O- and H-antigens. However, no further significant FimA diversification has occurred via point mutation after the transfers. In contrast, while fimH alleles also move horizontally (along with the fimA loci), they acquire point amino acid replacements at a higher rate than either housekeeping genes or fimA. These FimH mutations enhance binding to monomannose receptors and bacterial tropism for human vaginal epithelium. A similar pattern of rapid within-clonal structural evolution of the adhesive, but not pilin, subunit is also seen, respectively, in papG and papA alleles of the di-galactose-specific P-fimbriae. Thus, while structurally diverse pilin subunits of E. coli fimbriae are under selective pressure for frequent horizontal transfer between clones, the adhesive subunits of extraintestinal E. coli are under strong positive selection (Dn/Ds > 1 for fimH and papG) for functionally adaptive amino acid replacements.

Indexed as

Genetic VariationAdhesins, Escherichia coliAllelesClone CellsEscherichia coliEscherichia coli InfectionsEvolution, MolecularFemaleFimbriae, BacterialFimbriae ProteinsGene Transfer, HorizontalHumansPoint MutationVaginaVirulenceAdhesins, Escherichia coliFimbriae ProteinsfimbrillinfimH protein, E coli

Identifiers

PMID16420365
PMCPMC1380272
OpenAlexW2103933341

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.