Evidence map›Paper›PMID 16418396›Full record

ArticleThe Journal of experimental medicine2006

AID-dependent histone acetylation is detected in immunoglobulin S regions.

Lili Wang, Naree Whang, Robert Wuerffel, Amy L Kenter

Erratum issuedOpen access · bronzeAbstract read
In one paragraph

Article in The Journal of experimental medicine, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 48 papers.

0numbers the graph read from it
0cells of the map it votes in
48citing papers in PubMed
3.8field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

48 citing papers in PubMed, 81 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Review
  5. Article
  6. Review
  7. Review
  8. Article
  9. Article
  10. 53BP1 Contributes toJournal of immunology (Baltimore, Md. : 1950) · 2017
    Article
  11. Physiological Roles of DNA Double-Strand Breaks.Journal of nucleic acids · 2017
    Review
  12. Review
  13. AID hits the jackpot when missing the target.Current opinion in immunology · 2016
    Review
  14. Review
  15. Article
  16. Article
  17. Review
  18. Review
  19. Article
  20. Epigenetics of the antibody response.Trends in immunology · 2013
    Review
4 · The record

Corrections and comments

  • Erratum issued
5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Lili WangDepartment of Microbiology and Immunology, University of Illinois College of Medicine, Chicago, IL 60612, USA.
Naree Whang
Robert Wuerffel
Amy L Kenter
University of Illinois Urbana-Champaign · USIllinois College · US

Funding

Factors and DNA Motifs Involved in Ig Class SwitchR01AI052400 · NIAID · UNIVERSITY OF ILLINOIS AT CHICAGO · PI KENTER, AMY L · 2003 to 2012
$3.7M
CHARACTERIZING ISOTYPE SWITCHING USING SWITCH SUBSTRATESR01AI045045 · NIAID · UNIVERSITY OF ILLINOIS AT CHICAGO · PI KENTER, AMY L. · 2000 to 2003
$1.1M
NIAID NIH HHS R01 AI045045NIAID NIH HHS R01 AI052400
6 · The paper itself

Abstract

Class switch recombination (CSR) is regulated by the expression of activation-induced deaminase (AID) and germline transcripts (GLTs). AID-dependent double-strand breaks (DSBs) are introduced into switch (S) regions and stimulate CSR. Although histone acetylation (Ac) has been well documented in transcription regulation, its role in DNA damage repair remains largely unexplored. The 1B4.B6 B cell line and normal splenic B cells were activated to undergo CSR and analyzed for histone Ac by chromatin immunoprecipitation (ChIP). A detailed study of the Igamma3-Sgamma3-Cgamma3 locus demonstrated that acetylated histones are focused to the Igamma3 exon and the Sgamma3 region but not to the intergenic areas. Histone H3 Ac is strongly correlated with GLT expression at four S regions, whereas H4 Ac was better associated with B cell activation and AID expression. To more directly examine the relationship between H4 Ac and AID, LPS-activated AID KO and WT B cells were analyzed and express comparable levels of GLTs. In AID-deficient B cells, both histones H3 and H4 are reduced where H4 is more severely affected as compared with WT cells. Our findings raise the intriguing possibility that histone H4 Ac at S regions is a marker for chromatin modifications associated with DSB repair during CSR.

Indexed as

Immunoglobulin Class SwitchingImmunoglobulin Switch RegionAcetylationAICDA (Activation-Induced Cytidine Deaminase)AnimalsB-LymphocytesCells, CulturedChromatinChromatin ImmunoprecipitationCytidine DeaminaseHistonesLipopolysaccharidesMiceMice, KnockoutAICDA (Activation-Induced Cytidine Deaminase)ChromatinCytidine DeaminaseHistonesLipopolysaccharides

Identifiers

PMID16418396
PMCPMC2118092
OpenAlexW2161958294

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.