Evidence map›Paper›PMID 16416153›Full record

ArticleTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik2006

Functional mapping in pea, as an aid to the candidate gene selection and for investigating synteny with the model legume Medicago truncatula.

G Aubert, J Morin, F Jacquin, K Loridon, M C Quillet, A Petit, C Rameau, I Lejeune-Hénaut, T Huguet, J Burstin

Abstract read
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In one paragraph

Article in TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 62 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
62citing papers in PubMed, 1 pooled it
13.3field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

62 citing papers in PubMed, 1 synthesis or guideline pooled it, 163 citations in OpenAlex.

  1. Pooled it
  2. Article
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  7. International journal of molecular sciences · 2020
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  13. First genetic linkage map ofHorticulture research · 2018
    Article
  14. Article
  15. Article
  16. Plant physiology · 2017
    Article
  17. Article
  18. Article
  19. Article
  20. Article

2 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 2 countries.

G AubertUnité de recherche en génétique et écophysiologie des légumineuses, URLEG, INRA, Domaine d'Epoisses, 21110 Bretenières, France.
J Morin
F Jacquin
K Loridon
M C Quillet
A Petit
C Rameau
I Lejeune-Hénaut
T Huguet
J Burstin
Institut National de la Recherche Agronomique · MADépartement Biologie et Amélioration des Plantes · FRLaboratoire des Interactions Plantes Micro-Organismes · FRStress Abiotiques et Différenciation des Végétaux Cultivés · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The identification of the molecular polymorphisms giving rise to phenotypic trait variability-both quantitative and qualitative-is a major goal of the present agronomic research. Various approaches such as positional cloning or transposon tagging, as well as the candidate gene strategy have been used to discover the genes underlying this variation in plants. The construction of functional maps, i.e. composed of genes of known function, is an important component of the candidate gene approach. In the present paper we report the development of 63 single nucleotide polymorphism markers and 15 single-stranded conformation polymorphism markers for genes encoding enzymes mainly involved in primary metabolism, and their genetic mapping on a composite map using two pea recombinant inbred line populations. The complete genetic map covers 1,458 cM and comprises 363 loci, including a total of 111 gene-anchored markers: 77 gene-anchored markers described in this study, 7 microsatellites located in gene sequences, 16 flowering time genes, the Tri gene, 5 morphological markers, and 5 other genes. The mean spacing between adjacent markers is 4 cM and 90% of the markers are closer than 10 cM to their neighbours. We also report the genetic mapping of 21 of these genes in Medicago truncatula and add 41 new links between the pea and M. truncatula maps. We discuss the use of this new composite functional map for future candidate gene approaches in pea.

Indexed as

Chromosome MappingChromosomes, PlantModels, BiologicalDatabases, GeneticDNA, PlantFlowersGenes, PlantGenetic LinkageGenetic MarkersGenotypeMedicago truncatulaMicrosatellite RepeatsPisum sativumPolymorphism, Single NucleotidePolymorphism, Single-Stranded ConformationalSelection, GeneticDNA, PlantGenetic Markers

Identifiers

PMID16416153
OpenAlexW2134760402

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.