Evidence map›Paper›PMID 16415857›Full record

ArticleNature cell biology2006

The Polycomb group protein Eed protects the inactive X-chromosome from differentiation-induced reactivation.

Sundeep Kalantry, Kyle C Mills, Della Yee, Arie P Otte, Barbara Panning, Terry Magnuson

Open access · greenAbstract read
In one paragraph

Article in Nature cell biology, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 76 papers.

0numbers the graph read from it
0cells of the map it votes in
76citing papers in PubMed
5.6field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

76 citing papers in PubMed, 135 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Review
  5. Article
  6. Article
  7. Gene regulation in time and space during X-chromosome inactivation.Nature reviews. Molecular cell biology · 2022
    Review
  8. Review
  9. Article
  10. Article
  11. Review
  12. Review
  13. The many faces of Polycomb regulation by RNA.Current opinion in genetics & development · 2020
    Review
  14. Review
  15. Article
  16. Article
  17. Article
  18. Alteration of Epigenetic Regulation by Long Noncoding RNAs in Cancer.International journal of molecular sciences · 2018
    Review
  19. Polycomb complexes in X chromosome inactivation.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2017
    Review
  20. Review

16 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Sundeep KalantryDepartment of Genetics and the Carolina Center for Genome Sciences, University of North Carolina, Chapel Hill, NC 27599-7264, USA.
Kyle C Mills
Della Yee
Arie P Otte
Barbara Panning
Terry Magnuson
University of North Carolina at Chapel Hill · USUniversity of Amsterdam · NLUniversity of California, San Francisco · US

Funding

ALBINO DELETION COMPLEX AND EARLY MOUSE DEVELOPMENTR37HD024462 · NICHD · UNIV OF NORTH CAROLINA CHAPEL HILL · PI MAGNUSON, TERRY R · 2000 to 2009
$3.5M
Xist RNA and Regulation of Chromatin StructureR01GM063671 · NIGMS · UNIVERSITY OF CALIFORNIA SAN FRANCISCO · PI PANNING, BARBARA · 2001 to 2005
$1.2M
NICHD NIH HHS R37 HD024462NIGMS NIH HHS R01 GM063671
6 · The paper itself

Abstract

The Polycomb group (PcG) encodes an evolutionarily conserved set of chromatin-modifying proteins that are thought to maintain cellular transcriptional memory by stably silencing gene expression. In mouse embryos that are mutated for the PcG protein Eed, X-chromosome inactivation (XCI) is not stably maintained in extra-embryonic tissues. Eed is a component of a histone-methyltransferase complex that is thought to contribute to stable silencing in undifferentiated cells due to its enrichment on the inactive X-chromosome in cells of the early mouse embryo and in stem cells of the extra-embryonic trophectoderm lineage. Here, we demonstrate that the inactive X-chromosome in Eed(-/-) trophoblast stem cells and in cells of the trophectoderm-derived extra-embryonic ectoderm in Eed(-/-) embryos remain transcriptionally silent, despite lacking the PcG-mediated histone modifications that normally characterize the facultative heterochromatin of the inactive X-chromosome. Whereas undifferentiated Eed(-/-) trophoblast stem cells maintained XCI, reactivation of the inactive X-chromosome occurred when these cells were differentiated. These results indicate that PcG complexes are not necessary to maintain transcriptional silencing of the inactive X-chromosome in undifferentiated stem cells. Instead, PcG proteins seem to propagate cellular memory by preventing transcriptional activation of facultative heterochromatin during differentiation.

Indexed as

X Chromosome InactivationAnimalsCDX2 Transcription FactorCell DifferentiationCell LineCells, CulturedEctodermEmbryo, MammalianEndodermEnhancer of Zeste Homolog 2 ProteinEpigenesis, GeneticGene ExpressionGreen Fluorescent ProteinsHeterochromatinHistone-Lysine N-MethyltransferaseHistonesCdx2 protein, mouseCDX2 Transcription FactorEed protein, mouseEnhancer of Zeste Homolog 2 ProteinEomes protein, mouseEzh2 protein, mouseGreen Fluorescent ProteinsHeterochromatinHistone-Lysine N-MethyltransferaseHistonesHomeodomain ProteinsPhc2 protein, mousePolycomb-Group ProteinsPolycomb Repressive Complex 2ProteinsReceptor, Fibroblast Growth Factor, Type 2Repressor ProteinsRNA, Long NoncodingRNA, UntranslatedSuz12 protein, mouseT-Box Domain ProteinsTranscription FactorsTsix transcript, mouseXIST non-coding RNA

Identifiers

PMID16415857
PMCPMC1400591
OpenAlexW1978429719

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.