Evidence map›Paper›PMID 16415212›Full record

ArticlePlant physiology2006

High-affinity nitrate transport in roots of Arabidopsis depends on expression of the NAR2-like gene AtNRT3.1.

Mamoru Okamoto, Anshuman Kumar, Wenbin Li, Ye Wang, M Yaeesh Siddiqi, Nigel M Crawford, Anthony D M Glass

Open access · bronzeAbstract read
In one paragraph

Article in Plant physiology, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 93 papers.

0numbers the graph read from it
0cells of the map it votes in
93citing papers in PubMed
14.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

93 citing papers in PubMed, 254 citations in OpenAlex.

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33 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

Mamoru OkamotoSection of Cell and Developmental Biology, Division of Biological Sciences, University of California at San Diego, La Jolla, 92093-0116, USA.
Anshuman Kumar
Wenbin Li
Ye Wang
M Yaeesh Siddiqi
Nigel M Crawford
Anthony D M Glass
University of British Columbia · CAUniversity of California San Diego · US

Funding

Molecular Genetics of Nitrate Metabolism and RegulationR01GM040672 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI CRAWFORD, NIGEL M. · 1994 to 2010
$3.3M
MOLECULAR GENETICS OF NITRATE REDUCTASE IN ARABIDOPSISR29GM040672 · NIGMS · UNIVERSITY OF CALIFORNIA SAN DIEGO · PI CRAWFORD, NIGEL M. · 1988 to 1992
–
NIGMS NIH HHS GM40672
6 · The paper itself

Abstract

The NAR2 protein of Chlamydomonas reinhardtii has no known transport activity yet it is required for high-affinity nitrate uptake. Arabidopsis (Arabidopsis thaliana) possesses two genes, AtNRT3.1 and AtNRT3.2, that are similar to the C. reinhardtii NAR2 gene. AtNRT3.1 accounts for greater than 99% of NRT3 mRNA and is induced 6-fold by nitrate. AtNRT3.2 was expressed constitutively at a very low level and did not compensate for the loss of AtNRT3.1 in two Atnrt3.1 mutants. Nitrate uptake by roots and nitrate induction of gene expression were analyzed in two T-DNA mutants, Atnrt3.1-1 and Atnrt3.1-2, disrupted in the AtNRT3.1 promoter and coding regions, respectively, in 5-week-old plants. Nitrate induction of the nitrate transporter genes AtNRT1.1 and AtNRT2.1 was reduced in Atnrt3.1 mutant plants, and this reduced expression was correlated with reduced nitrate concentrations in the tissues. Constitutive high-affinity influx was reduced by 34% and 89%, respectively, in Atnrt3.1-1 and Atnrt3.1-2 mutant plants, while high-affinity nitrate-inducible influx was reduced by 92% and 96%, respectively, following induction with 1 mm KNO(3) after 7 d of nitrogen deprivation. By contrast, low-affinity influx appeared to be unaffected. Thus, the constitutive high-affinity influx and nitrate-inducible high-affinity influx (but not the low-affinity influx) of higher plant roots require a functional AtNRT3 (NAR2) gene.

Indexed as

Amino Acid SequenceAnion Transport ProteinsArabidopsisArabidopsis ProteinsIon TransportMolecular Sequence DataMultigene FamilyMutationNitratesPlant RootsSequence AlignmentAnion Transport ProteinsArabidopsis ProteinsNitratesNRT3.1 protein, Arabidopsis

Identifiers

PMID16415212
PMCPMC1400568
OpenAlexW2132970959

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.