Evidence map›Paper›PMID 16415053›Full record

ArticleBiophysical journal2006

Revealing the topography of cellular membrane domains by combined atomic force microscopy/fluorescence imaging.

D J Frankel, J R Pfeiffer, Z Surviladze, A E Johnson, J M Oliver, B S Wilson, A R Burns

Open access · bronzeAbstract read
In one paragraph

Article in Biophysical journal, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
3.7field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 76 citations in OpenAlex.

  1. Spatial Deconstruction of the Plasma Membrane.Journal of the American Chemical Society · 2026
    Article
  2. Review
  3. Article
  4. Review
  5. Article
  6. Review
  7. Review
  8. Article
  9. Observational
  10. Review
  11. Article
  12. Spatio-temporal signaling in mast cells.Advances in experimental medicine and biology · 2011
    Review
  13. Article
  14. Article
  15. Article
  16. Interferometric fluorescent super-resolution microscopy resolves 3D cellular ultrastructure.Proceedings of the National Academy of Sciences of the United States of America · 2009
    Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 1 country.

D J FrankelBiomolecular Materials and Interfaces Department, MS1413 Sandia National Laboratories, Albuquerque, New Mexico 87185, USA.
J R Pfeiffer
Z Surviladze
A E Johnson
J M Oliver
B S Wilson
A R Burns
University of New Mexico · USSandia National Laboratories California · USNew Mexico Cancer Center · USTexas A&M University · US

Funding

Mapping for Specialized Domains for FCeRI Signaling & InternalizationR01AI051575 · NIAID · UNIVERSITY OF NEW MEXICO HEALTH SCIS CTR · PI WILSON, BRIDGET S · 2003 to 2013
$3.3M
Signaling Activity of lgE Receptor SubunitsR01GM049814 · NIGMS · UNIVERSITY OF NEW MEXICO · PI OLIVER, JANET M. · 1993 to 2008
$2.6M
NIAID NIH HHS R01 AI051575NIAID NIH HHS R01AI051575NIGMS NIH HHS P20GM66283NIGMS NIH HHS R01 GM049814NIGMS NIH HHS R01GM49814
6 · The paper itself

Abstract

Simultaneous atomic force microscopy (AFM) and confocal fluorescence imaging were used to observe in aqueous buffer the three-dimensional landscape of the inner surface of membrane sheets stripped from fixed tumor mast cells. The AFM images reveal prominent, irregularly shaped raised domains that label with fluorescent markers for both resting and activated immunoglobin E receptors (FcepsilonRI), as well as with cholera toxin-aggregated GM1 and clathrin. The latter suggests that coated pits bud from these regions. These features are interspersed with flatter regions of membrane and are frequently surrounded and interconnected by cytoskeletal assemblies. The raised domains shrink in height by approximately 50% when cholesterol is extracted with methyl-beta-cyclodextrin. Based on composition, the raised domains seen by AFM correspond to the cholesterol-enriched dark patches observed in transmission electron microscopy (TEM). These patches were previously identified as sites of signaling and endocytosis based on their localization of activated FcepsilonRI, at least 10 associated signaling molecules, and the presence of clathrin-coated pits. Overall the data suggest that signaling and endocytosis occur in mast cells from raised membrane regions that depend on cholesterol for their integrity and may be organized in specific relationship with the cortical cytoskeleton.

Indexed as

Animalsbeta-CyclodextrinsCell MembraneCholera ToxinCholesterolClathrinCytoplasmCytoskeletonDinitrophenolsEndocytosisGangliosidesG(M1) GangliosideLipid MetabolismMast CellsMicroscopy, Atomic ForceMicroscopy, Confocalbeta-CyclodextrinsCholera ToxinCholesterolClathrinDinitrophenolsGangliosidesG(M1) Gangliosidemethyl-beta-cyclodextrinReceptors, IgE

Identifiers

PMID16415053
PMCPMC1403184
OpenAlexW2057533631

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.