Evidence map›Paper›PMID 16409631›Full record

ArticleRetrovirology2006

Intracytoplasmic maturation of the human immunodeficiency virus type 1 reverse transcription complexes determines their capacity to integrate into chromatin.

Sergey Iordanskiy, Reem Berro, Maria Altieri, Fatah Kashanchi, Michael Bukrinsky

Open access · goldAbstract read
In one paragraph

Article in Retrovirology, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 62 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
62citing papers in PubMed, 1 pooled it
3.1field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

62 citing papers in PubMed, 1 synthesis or guideline pooled it, 94 citations in OpenAlex.

  1. HIV Genome-Wide Protein Associations: a Review of 30 Years of Research.Microbiology and molecular biology reviews : MMBR · 2016
    Pooled it
  2. Review
  3. Article
  4. Review
  5. HIV-1 cores retain their integrity until minutes before uncoating in the nucleus.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  6. Review
  7. Article
  8. Early HIV replication revisited.Nature microbiology · 2020
    Article
  9. Article
  10. Review
  11. Article
  12. Article
  13. Review
  14. Article
  15. Review
  16. Article
  17. Review
  18. Second generation imaging of nuclear/cytoplasmic HIV-1 complexes.AIDS research and human retroviruses · 2014
    Article
  19. Article
  20. The fate of HIV-1 capsid: a biochemical assay for HIV-1 uncoating.Methods in molecular biology (Clifton, N.J.) · 2014
    Article

2 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Sergey IordanskiyDepartment of Microbiology, Immunology and Tropical Medicine, The George Washington University, Washington, DC 20037, USA. mtmsni@gwumc.edu
Reem Berro
Maria Altieri
Fatah Kashanchi
Michael Bukrinsky
George Washington University · US

Funding

VPR AND HIV1 NUCLEAR TRANSLOCATIONR01AI033776 · NIAID · PICOWER INSTITUTE FOR MEDICAL RESEARCH · PI BUKRINSKY, MICHAEL ILYA · 1998 to 2006
$2.0M
NUCLEAR TRANSLOCATION OF HIV1 GENOME AS A DRUG TARGETR01AI040386 · NIAID · PICOWER INSTITUTE FOR MEDICAL RESEARCH · PI BUKRINSKY, MICHAEL ILYA · 1997 to 2004
$1.1M
NIAID NIH HHS R01 AI033776NIAID NIH HHS R01 AI040386
6 · The paper itself

Abstract

backgroundThe early events of the HIV-1 life cycle include entry of the viral core into target cell, assembly of the reverse transcription complex (RTCs) performing reverse transcription, its transformation into integration-competent complexes called pre-integration complexes (PICs), trafficking of complexes into the nucleus, and finally integration of the viral DNA into chromatin. Molecular details and temporal organization of these processes remain among the least investigated and most controversial problems in the biology of HIV.

resultsTo quantitatively evaluate maturation and nuclear translocation of the HIV-1 RTCs, nucleoprotein complexes isolated from the nucleus (nRTC) and cytoplasm (cRTC) of HeLa cells infected with MLV Env-pseudotyped HIV-1 were analyzed by real-time PCR. While most complexes completed reverse transcription in the cytoplasm, some got into the nucleus before completing DNA synthesis. The HIV-specific RNA complexes could get into the nucleus when reverse transcription was blocked by reverse transcriptase inhibitor, although nuclear import of RNA complexes was less efficient than of DNA-containing RTCs. Analysis of the RTC nuclear import in synchronized cells infected in the G2/M phase of the cell cycle showed enrichment in the nuclei of RTCs containing incomplete HIV-1 DNA compared to non-synchronized cells, where RTCs with complete reverse transcripts prevailed. Immunoprecipitation assays identified viral proteins IN, Vpr, MA, and cellular Ini1 and PML associated with both cRTCs and nRTCs, whereas CA was detected only in cRTCs and RT was diminished in nRTCs. Cytoplasmic maturation of the complexes was associated with increased immunoreactivity with anti-Vpr and anti-IN antibodies, and decreased reactivity with antibodies to RT. Both cRTCs and nRTCs carried out endogenous reverse transcription reaction in vitro. In contrast to cRTCs, in vitro completion of reverse transcription in nRTCs did not increase their integration into chromatin.

conclusionThese results suggest that RTC maturation occurs predominantly in the cytoplasm. Immature RTCs containing RT and incomplete DNA can translocate into the nucleus during mitosis and complete reverse transcription, but are defective for integration.

Indexed as

Transcription, GeneticCell DivisionChromatinCytoplasmDNA, ComplementaryDNA, ViralHeLa CellsHIV-1HIV Reverse TranscriptaseHumansKineticsPolymerase Chain ReactionTime FactorsVirus IntegrationChromatinDNA, ComplementaryDNA, ViralHIV Reverse Transcriptase

Identifiers

PMID16409631
PMCPMC1360674
OpenAlexW1550872944

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.