Evidence map›Paper›PMID 16408241›Full record

ArticleJournal of molecular evolution2006

Adaptive evolution and recombination of Rickettsia antigens.

Francis M Jiggins

Open access · greenAbstract read
In one paragraph

Article in Journal of molecular evolution, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
1.9field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 25 citations in OpenAlex.

  1. Review
  2. Metagenome diversity illuminates origins of pathogen effectors.bioRxiv : the preprint server for biology · 2023
    Article
  3. Molecular Characterization by Multilocus Sequence Typing and Diversity Analysis ofVector borne and zoonotic diseases (Larchmont, N.Y.) · 2022
    Article
  4. Frontiers in microbiology · 2022
    Article
  5. Article
  6. Article
  7. Secretome of obligate intracellular Rickettsia.FEMS microbiology reviews · 2015
    Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Symbiont-mediated protection.Proceedings. Biological sciences · 2008
    Review
  16. Article
  17. Article
  18. Article
  19. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

1 author at 1 institution in 1 country.

Francis M JigginsInstitute of Cell Animal and Population Biology, Ashworth Laboratories, School of Biology, University of Edinburgh, The King's Buildings, West Mains Road, Edinburgh EH9 3JT, UK. francis.jiggins@ed.ac.uk
University of Edinburgh · GB

Funding

Wellcome Trust
6 · The paper itself

Abstract

The genus Rickettsia consists of intracellular bacteria that cause a variety of arthropod vectored human diseases. I have examined the evolutionary processes that are generating variation in antigens that are potential vaccine candidates. The surface proteins rOmpA and rOmpB are subject to intense positive natural selection, causing rapid diversification of their amino acid sequences between species. The positively selected amino acids were mapped and cluster together in regions that may indicate the location of functionally important regions such as epitopes. In contrast to the rOmp antigens, there is no evidence of positive selection on the intracytoplasmic antigen PS120 despite low selective constraints on this gene. All three genes showed evidence of recombination between species, and certain sequences are clear chimeras of two parental sequences. However, recombination has been sufficiently infrequent that the phylogenies of the three genes are similar, although not identical.

Indexed as

Evolution, MolecularRecombination, GeneticAdaptation, BiologicalAntigens, BacterialBacterial Outer Membrane ProteinsBacterial ProteinsBase SequencePhylogenyRickettsiaSequence AlignmentAntigens, BacterialBacterial Outer Membrane ProteinsBacterial ProteinsOMPA outer membrane proteinsRps120 protein, Rickettsia japonica

Identifiers

PMID16408241
PMCPMC1800823
OpenAlexW2059186476

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.