Evidence map›Paper›PMID 16407405›Full record

ArticleMolecular biology of the cell2006

Cip1 and Cip2 are novel RNA-recognition-motif proteins that counteract Csx1 function during oxidative stress.

Victoria Martín, Miguel A Rodríguez-Gabriel, W Hayes McDonald, Stephen Watt, John R Yates, Jürg Bähler, Paul Russell

Open access · greenAbstract read
In one paragraph

Article in Molecular biology of the cell, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
1.4field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 25 citations in OpenAlex.

  1. Article
  2. Two Novel Dimorphism-Related Virulence Factors ofInternational journal of molecular sciences · 2021
    Article
  3. Article
  4. Article
  5. Article
  6. Cadmium-induced proteome remodeling regulated by Spc1/Sty1 and Zip1 in fission yeast.Toxicological sciences : an official journal of the Society of Toxicology · 2012
    Article
  7. Article
  8. Article
  9. Article
  10. Control of mRNA stability by SAPKs.Topics in current genetics · 2008
    Article
  11. Article
  12. Review
  13. Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

Victoria MartínDepartment of Molecular Biology, The Scripps Research Institute, La Jolla, CA 92037, USA.
Miguel A Rodríguez-Gabriel
W Hayes McDonald
Stephen Watt
John R Yates
Jürg Bähler
Paul Russell
Scripps Research Institute · USWellcome Sanger Institute · GB

Funding

Yeast Genetics and Stress Response Genes-BiomedicalP42ES010337 · NIEHS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI TUKEY, ROBERT H · 2000 to 2022
$69.8M
PROTEOME ANALYSIS OF NORMAL AND CATARACTOUS LENSESR01EY013288 · NEI · SCRIPPS RESEARCH INSTITUTE · PI YATES, JOHN ROBERT · 2000 to 2003
$1.4M
COMMUNITY RESEARCH FOR EJ--WORKSHOPS FROM THE FIELDR13ES010037 · NIEHS · RUTGERS THE STATE UNIV OF NJ NEWARK · PI GELOBTER, MICHEL · 1999 to 1999
–
Cancer Research UK A6517NEI NIH HHS EY1328801NIEHS NIH HHS ES10037NIEHS NIH HHS P42 ES010337Wellcome Trust 077118
6 · The paper itself

Abstract

Eukaryotic cells reprogram their global patterns of gene expression in response to stress. Recent studies in Schizosaccharomyces pombe showed that the RNA-binding protein Csx1 plays a central role in controlling gene expression during oxidative stress. It does so by stabilizing atf1(+) mRNA, which encodes a subunit of a bZIP transcription factor required for gene expression during oxidative stress. Here, we describe two related proteins, Cip1 and Cip2, that were identified by multidimensional protein identification technology (MudPIT) as proteins that coprecipitate with Csx1. Cip1 and Cip2 are cytoplasmic proteins that have RNA recognition motifs (RRMs). Neither protein is essential for viability, but a cip1Delta cip2Delta strain grows poorly and has altered cellular morphology. Genetic epistasis studies and whole genome expression profiling show that Cip1 and Cip2 exert posttranscriptional control of gene expression in a manner that is counteracted by Csx1. Notably, the sensitivity of csx1Delta cells to oxidative stress and their inability to induce expression of Atf1-dependent genes are partially rescued by cip1Delta and cip2Delta mutations. This study emphasizes the importance of a modulated mRNA stability in the eukaryotic stress response pathways and adds new information to the role of RNA-binding proteins in the oxidative stress response.

Indexed as

Oxidative StressAmino Acid MotifsAmino Acid SequenceGene Expression Regulation, FungalHydrogen PeroxideMolecular Sequence DataMutationPhenotypeRNA-Binding ProteinsRNA, MessengerSchizosaccharomycesSchizosaccharomyces pombe ProteinsSequence Homology, Amino AcidTranscription, GeneticCip1 protein, S pombeCip2 protein, S pombeCsx1 protein, S pombeHydrogen PeroxideRNA-Binding ProteinsRNA, MessengerSchizosaccharomyces pombe Proteins

Identifiers

PMID16407405
PMCPMC1382307
OpenAlexW2143974589

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.