Evidence map›Paper›PMID 16407333›Full record

ArticleNucleic acids research2006

A novel multifunctional factor involved in trans-splicing of chloroplast introns in Chlamydomonas.

Livia Merendino, Karl Perron, Michèle Rahire, Isabelle Howald, Jean-David Rochaix, Michel Goldschmidt-Clermont

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In one paragraph

Article in Nucleic acids research, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
3.1field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 80 citations in OpenAlex.

  1. Article
  2. Article
  3. Plant organellar RNA maturation.The Plant cell · 2023
    Review
  4. The ChloroplastCells · 2021
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Livia MerendinoDepartment of Molecular Biology, University of Geneva, 30 quai E. Ansermet, CH-1211 Geneva 4, Switzerland.
Karl Perron
Michèle Rahire
Isabelle Howald
Jean-David Rochaix
Michel Goldschmidt-Clermont
University of Geneva · CH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In the chloroplast of Chlamydomonas reinhardtii, psaA mRNA is spliced in trans from three separate precursors which assemble to form two group II introns. A fourth transcript, tscA, completes the structure of the first intron. Of the fourteen nucleus-encoded factors involved in psaA splicing, only two are required for splicing of both introns. We cloned and characterized the first of these more general factors, Raa1. Consistently with its role in psaA splicing, Raa1 is imported in the chloroplast where it is found in a membrane fraction and is part of a large ribonucleoprotein complex. One mutant, raa1-L137H, is defective for splicing of both introns, but another allelic mutant, raa1-314B, still expresses the 3' part of the Raa1 gene and is deficient only in splicing of intron 2. This observation and a deletion analysis indicate the presence of two domains in Raa1. The C-terminal domain is necessary and sufficient for processing of tscA RNA and splicing of the first intron, while the central domain is essential for splicing of the second intron. The combination of these two functional domains in Raa1 suggests that this new factor may coordinate trans-splicing of the two introns to improve the efficiency of psaA maturation.

Indexed as

IntronsTrans-SplicingAlgal ProteinsAllelesAmino Acid SequenceAnimalsChlamydomonas reinhardtiiChloroplastsCloning, MolecularMembrane ProteinsMolecular Sequence DataMutationProtein Structure, TertiaryProtozoan ProteinsRepetitive Sequences, Amino AcidRibonucleasesAlgal ProteinsMembrane ProteinsProtozoan ProteinsRibonucleasesRNA-Binding ProteinstscA protein, Chlamydomonas

Identifiers

PMID16407333
PMCPMC1326246
OpenAlexW2145026038

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.