Evidence map›Paper›PMID 16404599›Full record

ArticlePlant cell reports2006

Oligonucleotide-directed gene repair in wheat using a transient plasmid gene repair assay system.

Chongmei Dong, Peter Beetham, Kate Vincent, Peter Sharp

Abstract read
PubMed Publisher
In one paragraph

Article in Plant cell reports, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
1.1field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 48 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Review
  6. Review
  7. Genome Editing in Agriculture: Technical and Practical Considerations.International journal of molecular sciences · 2019
    Review
  8. Review
  9. Article
  10. Article
  11. Review
  12. Review
  13. Review
  14. The Regulatory Status of Genome-edited Crops.Plant biotechnology journal · 2016
    Review
  15. Review
  16. Article
  17. Review
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 2 countries.

Chongmei DongPlant Breeding Institute, University of Sydney, PMB 11, Camden, NSW, 2570, Australia. chongd@camden.usyd.edu.au
Peter Beetham
Kate Vincent
Peter Sharp
RoZetta Institute · AUCibus (United States) · USUniversity of Sydney · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Oligonucleotide-directed gene repair is a potential technique for agricultural trait modification in economically important crops. However, large variation in the repair frequencies among the scientific reports indicates that there are many factors influencing the repair process. We report here a transient assay system using GFP as a reporter for testing the efficiency of plasmid DNA repair in cultured wheat cells. This assay showed that osmotic medium supplemented with 2,4-D increased the oligo-targeting frequency, and that the repair of a point mutation was more efficient than repair of a single base deletion mutation in cultured scutellum cells of immature wheat embryos. This study provides the first evidence that oligonucleotide-directed mutagenesis is applicable to regenerable cultured wheat scutellum cells.

Indexed as

DNA Repair2,4-Dichlorophenoxyacetic AcidAmino Acid SequenceBase Pair MismatchCells, CulturedCulture MediaGenes, ReporterGreen Fluorescent ProteinsMolecular Sequence DataMutagenesis, Site-DirectedOligonucleotidesOsmosisPlasmidsPoint MutationSeedsSequence Deletion2,4-Dichlorophenoxyacetic AcidCulture MediaGreen Fluorescent ProteinsOligonucleotides

Identifiers

PMID16404599
OpenAlexW2077833918

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.