ArticleTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik2006
Development of four phylogenetically-arrayed BAC libraries and sequence of the APA locus in Phaseolus vulgaris.
Article in TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.
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Who cites it
28 citing papers in PubMed.
- The Kirkhouse Trust: Successes and Challenges in Twenty Years of Supporting Independent, Contemporary Grain Legume Breeding Projects in India and African Countries.Plants (Basel, Switzerland) · 2024Review
- Translocations and inversions: major chromosomal rearrangements during Vigna (Leguminosae) evolution.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2024Article
- QTL mapping and identification of genes associated with the resistance to Acanthoscelides obtectus in cultivated common bean using a high-density genetic linkage map.BMC plant biology · 2022Article
- Breaks of macrosynteny and collinearity among moth bean (Vigna aconitifolia), cowpea (V. unguiculata), and common bean (Phaseolus vulgaris).Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2020Article
- Common Bean Subtelomeres Are Hot Spots of Recombination and Favor Resistance Gene Evolution.Frontiers in plant science · 2018Article
- Evolutionary dynamics of satellite DNA repeats from Phaseolus beans.Protoplasma · 2017Article
- Speeding up chromosome evolution in Phaseolus: multiple rearrangements associated with a one-step descending dysploidy.Chromosoma · 2016Article
- Genomic Analysis of Storage Protein Deficiency in Genetically Related Lines of Common Bean (Phaseolus vulgaris).Frontiers in plant science · 2016Article
- Analysis of BAC-end sequences in common bean (Phaseolus vulgaris L.) towards the development and characterization of long motifs SSRs.Plant molecular biology · 2014Article
- Genomics-assisted breeding in four major pulse crops of developing countries: present status and prospects.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2014Review
- Annotation and sequence diversity of transposable elements in common bean (Phaseolus vulgaris).Frontiers in plant science · 2014Article
- High macro-collinearity between lima bean (Phaseolus lunatus L.) and the common bean (P. vulgaris L.) as revealed by comparative cytogenetic mapping.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2013Article
- QUES, a new Phaseolus vulgaris genotype resistant to common bean weevils, contains the Arcelin-8 allele coding for new lectin-related variants.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2013Article
- Comparative cytogenetic mapping between the lima bean (Phaseolus lunatus L.) and the common bean (P. vulgaris L.).TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2012Article
- Bacterial artificial chromosome libraries of pulse crops: characteristics and applications.Journal of biomedicine & biotechnology · 2012Review
- Article
- Chromosome identification in the Andean common bean accession G19833 (Phaseolus vulgaris L., Fabaceae).Genetics and molecular biology · 2011Article
- Article
- Microsatellite diversity and genetic structure among common bean (Phaseolus vulgaris L.) landraces in Brazil, a secondary center of diversity.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2010Article
- Genetic mapping of microsatellite markers around the arcelin bruchid resistance locus in common bean.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2010Article
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4 authors.
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No grant is acknowledged in the PubMed record.
Abstract
The APA family of seed proteins consists of three subfamilies, in evolutionary order of hypothesized appearance: phytohaemagglutinins (PHA), alpha-amylase inhibitors (alphaAI), and arcelins (ARL). The APA family plays a defensive role against mammalian and insect seed predation in common bean (Phaseolus vulgaris L.). The main locus (APA) for this gene family is situated on linkage group B4. In order to elucidate the pattern of duplication and diversification at this locus, we developed a BAC library in each of four different Phaseolus genotypes that represent presumptive steps in the evolutionary diversification of the APA family. Specifically, BAC libraries were established in one P. lunatus (cv. 'Henderson: PHA+ alphaAI- ARL-) and three P. vulgaris accessions (presumed ancestral wild G21245 from northern Peru: PHA+ alphaAI+ ARL-; Mesoamerican wild G02771: PHA+ alphaAI+ ARL+; and Mesoamerican breeding line BAT93: PHA+ alphaAI+ ARL-). The libraries were constructed after HindIII digestion of high molecular weight DNA, obtained with a novel nuclei isolation procedure. The frequency of empty or cpDNA-sequence-containing clones in all libraries is low (generally <1%). The Henderson, G21245, and G02771 libraries have a 10x genome coverage, whereas the BAT93 library has a 20x coverage to allow further, more detailed genomic analysis of the bean genome. The complete sequence of a 155 kbp-insert clone of the G02771 library revealed six sequences belonging to the APA gene family, including members of the three subfamilies, as hypothesized. The different subfamilies were interspersed with retrotransposon sequences. In addition, other sequences were identified with similarity to chloroplast DNA, a dehydrin gene, and the Arabidopsis flowering D locus. Linkage between the dehydrin gene and the D1711 RFLP marker identifies a potential syntenic region between parts of common bean linkage group B4 and cowpea linkage group 2.
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