Evidence map›Paper›PMID 16400619›Full record

ArticleAmerican journal of human genetics2006

A genomewide search finds major susceptibility loci for gallbladder disease on chromosome 1 in Mexican Americans.

Sobha Puppala, Gerald D Dodd, Sharon Fowler, Rector Arya, Jennifer Schneider, Vidya S Farook, Richard Granato, Thomas D Dyer, Laura Almasy, Christopher P Jenkinson and 4 more

Open access · bronzeAbstract read
In one paragraph

Article in American journal of human genetics, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 42 papers.

0numbers the graph read from it
0cells of the map it votes in
42citing papers in PubMed
7.3field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

42 citing papers in PubMed, 102 citations in OpenAlex.

  1. Article
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  8. Mendelian Inconsistent Signatures from 1314 Ancestrally Diverse Family Trios Distinguish Biological Variation from Sequencing Error.Journal of computational biology : a journal of computational molecular cell biology · 2019
    Article
  9. Evaluating the contribution of rare variants to type 2 diabetes and related traits using pedigrees.Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  10. Article
  11. Epigenetic Age Acceleration Assessed with Human White-Matter Images.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2017
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 3 institutions in 1 country.

Sobha PuppalaDepartment of Genetics, Southwest Foundation for Biomedical Research, San Antonio, TX 78245-0549, USA. spuppala@darwin.sfbr.org
Gerald D Dodd
Sharon Fowler
Rector Arya
Jennifer Schneider
Vidya S Farook
Richard Granato
Thomas D Dyer
Laura Almasy
Christopher P Jenkinson
Andrew K Diehl
Michael P Stern
John Blangero
Ravindranath Duggirala
Texas Biomedical Research Institute · USThe University of Texas Health Science Center at San Antonio · USUrology San Antonio · US

Funding

Quantitative Trait Locus Mapping in Human PedigreesR37MH059490 · NIMH · TEXAS BIOMEDICAL RESEARCH INSTITUTE · PI BLANGERO, JOHN · 2001 to 2010
$6.8M
NIDDM SUSCEPTIBILITY GENES IN MEXICAN-AMERICANSR01DK047482 · NIDDK · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI LEHMAN, DONNA M · 1993 to 2010
$5.4M
Identification of Prediabetes Genes by Expression Linkage AnalysisR01DK079195 · NIDDK · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI JENKINSON, CHRISTOPHER P · 2008 to 2013
$2.5M
GENETICS OF GALLBLADDER DISEASE IN MEXICAN AMERICANSR01DK053889 · NIDDK · UNIVERSITY OF TEXAS HLTH SCI CTR SAN ANT · PI DUGGIRALA, RAVINDRANATH · 1998 to 2011
$2.3M
GENETIC EPIDEMIOLOGY OF NIDDM IN MEXICAN AMERICANSR01DK042273 · NIDDK · UNIVERSITY OF TEXAS HLTH SCI CTR SAN ANT · PI STERN, MICHAEL P · 1991 to 2000
$532k
QUANTITATIVE TRAIT LOCUS MAPPING IN HUMAN PEDIGREESR01MH059490 · NIMH · SOUTHWEST FOUNDATION FOR BIOMEDICAL RES · PI BLANGERO, JOHN · 1998 to 2000
$426k
NIDDK NIH HHS DK42273NIDDK NIH HHS DK47482NIDDK NIH HHS DK53889NIDDK NIH HHS R01 DK047482NIDDK NIH HHS R01 DK053889NIDDK NIH HHS R01 DK079195NIMH NIH HHS MH59490NIMH NIH HHS R01 MH059490NIMH NIH HHS R37 MH059490
6 · The paper itself

Abstract

Gallbladder disease (GBD) is one of the major digestive diseases. Its risk factors include age, sex, obesity, type 2 diabetes, and metabolic syndrome (MS). The prevalence of GBD is high in minority populations, such as Native and Mexican Americans. Ethnic differences, familial aggregation of GBD, and the identification of susceptibility loci for gallstone disease by use of animal models suggest genetic influences on GBD. However, the major susceptibility loci for GBD in human populations have not been identified. Using ultrasound-based information on GBD occurrence and a 10-cM gene map, we performed multipoint variance-components analysis to localize susceptibility loci for GBD. Phenotypic and genotypic data from 715 individuals in 39 low-income Mexican American families participating in the San Antonio Family Diabetes/Gallbladder Study were used. Two GBD phenotypes were defined for the analyses: (1) clinical or symptomatic GBD, the cases of cholecystectomies due to stones confirmed by ultrasound, and (2) total GBD, the clinical GBD cases plus the stone carriers newly diagnosed by ultrasound. With use of the National Cholesterol Education Program/Adult Treatment Panel III criteria, five MS risk factors were defined: increased waist circumference, hypertriglyceredemia, low high-density lipoprotein cholesterol, hypertension, and high fasting glucose. The MS risk-factor score (range 0-5) for a given individual was used as a single, composite covariate in the genetic analyses. After accounting for the effects of age, sex, and MS risk-factor score, we found stronger linkage signals for the symptomatic GBD phenotype. The highest LOD scores (3.7 and 3.5) occurred on chromosome 1p between markers D1S1597 and D1S407 (1p36.21) and near marker D1S255 (1p34.3), respectively. Other genetic locations (chromosomes 2p, 3q, 4p, 8p, 9p, 10p, and 16q) across the genome exhibited some evidence of linkage (LOD >or=1.2) to symptomatic GBD. Some of these chromosomal regions corresponded with the genetic locations of Lith loci, which influence gallstone formation in mouse models. In conclusion, we found significant evidence of major genetic determinants of symptomatic GBD on chromosome 1p in Mexican Americans.

Indexed as

Genetic Predisposition to DiseaseAdultAgedChromosomes, Human, Pair 1Gallbladder DiseasesGenome, HumanHumansIntracellular Signaling Peptides and ProteinsLod ScoreMaleMexican AmericansMiddle AgedMolecular EpidemiologyObesityPhenotypeProtein Tyrosine Phosphatase, Non-Receptor Type 6Intracellular Signaling Peptides and ProteinsProtein Tyrosine Phosphatase, Non-Receptor Type 6Protein Tyrosine PhosphatasesPTPN6 protein, humanPtpn6 protein, mouseReceptors, Tumor Necrosis Factor, Type II

Identifiers

PMID16400619
PMCPMC1380282
OpenAlexW2154441148

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.