Evidence map›Paper›PMID 16399953›Full record

ArticleAmerican journal of respiratory cell and molecular biology2006

Novel polymorphisms in the myosin light chain kinase gene confer risk for acute lung injury.

Li Gao, Audrey Grant, Indrani Halder, Roy Brower, Jonathan Sevransky, James P Maloney, Marc Moss, Carl Shanholtz, Charles R Yates, Gianfranco Umberto Meduri and 9 more

Open access · greenAbstract read
In one paragraph

Article in American journal of respiratory cell and molecular biology, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 82 papers.

0numbers the graph read from it
0cells of the map it votes in
82citing papers in PubMed
9.1field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

82 citing papers in PubMed, 152 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Observational
  9. Strategies to DAMPen COVID-19-mediated lung and systemic inflammation and vascular injury.Translational research : the journal of laboratory and clinical medicine · 2021
    Review
  10. Article
  11. Article
  12. Genes · 2021
    Article
  13. Noncanonical function of long myosin light chain kinase in increasing ER-PM junctions and augmentation of SOCE.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2020
    Article
  14. Review
  15. Review
  16. Article
  17. Article
  18. Splice Wars: The Role of MLCK Isoforms in Ventilation-induced Lung Injury.American journal of respiratory cell and molecular biology · 2018
    Article
  19. Review
  20. Review

22 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 1 institution in 1 country.

Li GaoDepartment of Medicine, University of Chicago Pritzker School of Medicine, 5841 S. Maryland Avenue, W604, Chicago, IL 60637, USA.
Audrey Grant
Indrani Halder
Roy Brower
Jonathan Sevransky
James P Maloney
Marc Moss
Carl Shanholtz
Charles R Yates
Gianfranco Umberto Meduri
Mark D Shriver
Roxann Ingersoll
Alan F Scott
Terri H Beaty
Jaideep Moitra
Shwu Fan Ma
Shui Q Ye
Kathleen C Barnes
Joe G N Garcia
University of Maryland, Baltimore · US

Funding

Tissue Culture Biomechanical CoreP01HL058064 · NHLBI · UNIVERSITY OF ILLINOIS AT CHICAGO · PI LAL, RATNESHWAR · 1998 to 2012
$27.8M
APPLIED GENOMICS IN CARDIOPULMONARY DISEASEU01HL066583 · NHLBI · JOHNS HOPKINS UNIVERSITY · PI GARCIA, JOE G. N. · 2000 to 2004
$2.0M
NHLBI NIH HHS HL 58064NHLBI NIH HHS HL 739946NHLBI NIH HHS U01 HL66583
6 · The paper itself

Abstract

The genetic basis of acute lung injury (ALI) is poorly understood. The myosin light chain kinase (MYLK) gene encodes the nonmuscle myosin light chain kinase isoform, a multifunctional protein involved in the inflammatory response (apoptosis, vascular permeability, leukocyte diapedesis). To examine MYLK as a novel candidate gene in sepsis-associated ALI, we sequenced exons, exon-intron boundaries, and 2 kb of 5' UTR of the MYLK, which revealed 51 single-nucleotide polymorphisms (SNPs). Potential association of 28 MYLK SNPs with sepsis-associated ALI were evaluated in a case-control sample of 288 European American subjects (EAs) with sepsis alone, subjects with sepsis-associated ALI, or healthy control subjects, and a sample population of 158 African American subjects (AAs) with sepsis and ALI. Significant single locus associations in EAs were observed between four MYLK SNPs and the sepsis phenotype (P<0.001), with an additional SNP associated with the ALI phenotype (P=0.03). A significant association of a single SNP (identical to the SNP identified in EAs) was observed in AAs with sepsis (P=0.002) and with ALI (P=0.01). Three sepsis risk-conferring haplotypes in EAs were defined downstream of start codon of smooth muscle MYLK isoform, a region containing putative regulatory elements (P<0.001). In contrast, multiple haplotypic analyses revealed an ALI-specific, risk-conferring haplotype at 5' of the MYLK gene in both European and African Americans and an additional 3' region haplotype only in African Americans. These data strongly implicate MYLK genetic variants to confer increased risk of sepsis and sepsis-associated ALI.

Indexed as

Linkage DisequilibriumPolymorphism, Single NucleotideAdolescentAdultAgedBlack or African AmericanCase-Control StudiesExonsFemaleHaplotypesHumansIntronsMaleMiddle AgedMyosin-Light-Chain KinaseProtein IsoformsMyosin-Light-Chain KinaseProtein Isoforms

Identifiers

PMID16399953
PMCPMC2644210
OpenAlexW2129514750

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.