Evidence map›Paper›PMID 16396680›Full record

ArticleBMC structural biology2006

DWNN, a novel ubiquitin-like domain, implicates RBBP6 in mRNA processing and ubiquitin-like pathways.

David J R Pugh, Eiso Ab, Andrew Faro, Portia T Lutya, Eberhard Hoffmann, D Jasper G Rees

Open access · hybridAbstract read
In one paragraph

Article in BMC structural biology, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed
1.0field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed, 93 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 3 countries.

David J R PughBiotechnology Department, University of the Western Cape, Modderdam Road, Bellville 7535, South Africa. dpugh@uwc.ac.za
Eiso Ab
Andrew Faro
Portia T Lutya
Eberhard Hoffmann
D Jasper G Rees
University of the Western Cape · ZAUniversity of the Witwatersrand · ZAUtrecht University · NLVarian Medical Systems (Germany) · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundRBBP6 is a 250 kDa splicing-associated protein that has been identified as an E3 ligase due to the presence of a RING finger domain. In humans and mice it interacts with both p53 and Rb, and plays a role in the induction of apoptosis and regulation of the cell cycle. RBBP6 has recently been shown to be highly up-regulated in oesophageal cancer, and to be a promising target for immunotherapy against the disease.

resultsWe show here using heteronuclear NMR that the N-terminal 81 amino acids of RBBP6 constitute a novel ubiquitin-like domain, which we have called the DWNN domain. The domain lacks conserved equivalents of K48 and K63, although the equivalents of K6 and K29 are highly, although not absolutely, conserved. The di-glycine motif that is characteristic of proteins involved in ubiquitination is found in the human and mouse form of the domain, although it is not present in all organisms. It forms part of a three-domain form of RBBP6 containing the DWNN domain, a zinc knuckle and a RING finger domain, which is found in all eukaryotic genomes so far examined, in the majority of cases at single copy number. The domain is also independently expressed in vertebrates as a single domain protein.

conclusionDWNN is a novel ubiquitin-like domain found only at the N-terminus of the RBBP6 family of splicing-associated proteins. The ubiquitin-like structure of the domain greatly increases the likelihood that RBBP6 functions through some form of ubiquitin-like modification. Furthermore, the fact that the DWNN domain is independently expressed in higher vertebrates leads us to propose that the domain may itself function as a novel ubiquitin-like modifier of other proteins.

Indexed as

Alternative SplicingAmino Acid SequenceCarrier ProteinsComputational BiologyDNADNA-Binding ProteinsDNA, ComplementaryEsophageal NeoplasmsHumansMagnetic Resonance SpectroscopyModels, MolecularModels, StatisticalMolecular Sequence DataProtein BindingProtein ConformationProtein IsoformsCarrier ProteinsDNADNA-Binding ProteinsDNA, ComplementaryProtein IsoformsRBBP6 protein, humanRNA, MessengerUbiquitinUbiquitin-Protein Ligases

Identifiers

PMID16396680
PMCPMC1360078
OpenAlexW1882636497

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.