ArticleBiophysical journal2006
Automated detection of elementary calcium release events using the á trous wavelet transform.
Article in Biophysical journal, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.
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Who cites it
23 citing papers in PubMed.
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- Calcium imaging analysis - how far have we come?F1000Research · 2021Review
- PunctaSpecks: A tool for automated detection, tracking, and analysis of multiple types of fluorescently labeled biomolecules.Cell calcium · 2020Article
- High Time Resolution Analysis of Voltage-Dependent and Voltage-Independent Calcium Sparks in Frog Skeletal Muscle Fibers.Frontiers in physiology · 2020Article
- CellSpecks: A Software for Automated Detection and Analysis of Calcium Channels in Live Cells.Biophysical journal · 2018Article
- An open source tool for automatic spatiotemporal assessment of calcium transients and local 'signal-close-to-noise' activity in calcium imaging data.PLoS computational biology · 2018Article
- Automated detection and analysis of depolarization events in human cardiomyocytes using MaDEC.Computers in biology and medicine · 2016Article
- An algorithm for automated detection, localization and measurement of local calcium signals from camera-based imaging.Cell calcium · 2014Article
- Automated analysis of dynamic Ca2+ signals in image sequences.Journal of visualized experiments : JoVE · 2014Article
- Wavelet transform-based de-noising for two-photon imaging of synaptic Ca2+ transients.Biophysical journal · 2013Article
- Automated region of interest analysis of dynamic Ca²+ signals in image sequences.American journal of physiology. Cell physiology · 2012Article
- Tracking stars: automated two-dimensional analysis of Ca²⁺ events. Focus on "Automated region of interest analysis of dynamic Ca²⁺ signals in image sequences".American journal of physiology. Cell physiology · 2012Article
- Activation of muscarinic receptors increases the activity of the granule neurones of the rat dorsal cochlear nucleus--a calcium imaging study.Pflugers Archiv : European journal of physiology · 2012Article
- cAMP/PKA-dependent increases in Ca Sparks, oscillations and SR Ca stores in retinal arteriolar myocytes after exposure to vasopressin.Investigative ophthalmology & visual science · 2010Article
- Molecular and biophysical mechanisms of Ca2+ sparklets in smooth muscle.Journal of molecular and cellular cardiology · 2009Review
- Increasing sensitivity of Ca2+ spark detection in noisy images by application of a matched-filter object detection algorithm.Biophysical journal · 2008Article
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3 authors.
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Abstract
We developed an algorithm for the automated detection and analysis of elementary Ca2+ release events (ECRE) based on the two-dimensional nondecimated wavelet transform. The transform is computed with the "à trous" algorithm using the cubic B-spline as the basis function and yields a multiresolution analysis of the image. This transform allows for highly efficient noise reduction while preserving signal amplitudes. ECRE detection is performed at the wavelet levels, thus using the whole spectral information contained in the image. The algorithm was tested on synthetic data at different noise levels as well as on experimental data of ECRE. The noise dependence of the statistical properties of the algorithm (detection sensitivity and reliability) was determined from synthetic data and detection parameters were selected to optimize the detection of experimental ECRE. The wavelet-based method shows considerably higher detection sensitivity and less false-positive counts than previously employed methods. It allows a more efficient detection of elementary Ca2+ release events than conventional methods, in particular in the presence of elevated background noise levels. The subsequent analysis of the morphological parameters of ECRE is reliably reproduced by the analysis procedure that is applied to the median filtered raw data. Testing the algorithm more rigorously showed that event parameter histograms (amplitude, rise time, full duration at half-maximum, and full width at half-maximum) were faithfully extracted from synthetic, "in-focus" and "out-of-focus" line scan sparks. Most importantly, ECRE obtained with laser scanning confocal microscopy of chemically skinned mammalian skeletal muscle fibers could be analyzed automatically to reproducibly establish event parameter histograms. In summary, our method provides a new valuable tool for highly reliable automated detection of ECRE in muscle but can also be adapted to other preparations.
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