Evidence map›Paper›PMID 16387763›Full record

ArticleBiophysical journal2006

Role of the Met3534-Ala4271 region of the ryanodine receptor in the regulation of Ca2+ release induced by calmodulin binding domain peptide.

Jaya Pal Gangopadhyay, Noriaki Ikemoto

Open access · bronzeAbstract read
In one paragraph

Article in Biophysical journal, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.8field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 17 citations in OpenAlex.

  1. Review
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  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Jaya Pal GangopadhyayBoston Biomedical Research Institute, Watertown, Massachusetts 02472, USA.
Noriaki Ikemoto
Boston Biomedical Research Institute · US

Funding

Regulation of Normal and Diseased Cardiac Ca2+ ChannelsR01HL072841 · NHLBI · BOSTON BIOMEDICAL RESEARCH INSTITUTE · PI IKEMOTO, NORIAKI · 2003 to 2011
$3.5M
STRUCTURE/FUNCTION OF SARCOPLASMIC RETICULUMR01AR016922 · NIAMS · BOSTON BIOMEDICAL RESEARCH INSTITUTE · PI IKEMOTO, NORIAKI · 1986 to 2006
$3.5M
NHLBI NIH HHS HL072841NHLBI NIH HHS R01 HL072841NIAMS NIH HHS AR 16922NIAMS NIH HHS R01 AR016922
6 · The paper itself

Abstract

CaMBP, a peptide corresponding to the 3614-3643 calmodulin (CaM) binding region of the ryanodine receptor (RyR1), is known to activate RyR1 Ca2+ channel. To analyze the mechanism of channel regulation by the CaMBP-RyR1 interaction, we investigated a), CaMBP binding to RyR1, b), induced local conformational changes in the CaMBP binding region of RyR1 using the fluorescent conformational probe badan attached to CaMBP (CaMBP-badan), and c), effects of "a" and "b" on SR Ca2+ release. We also monitored the interaction of CaMBP-badan with CaM and a peptide corresponding to the Met3534-Ala4271 region of RyR1 (R3534-4271) as a control. At lower peptide concentrations (< or =15 microM), CaMBP binding to RyR1 increased the intensity of badan fluorescence emission at a shorter wavelength (the state resembling CaMBP-badan/Ca-CaM) and induced Ca2+ release. Further increase in CaMBP concentration (up to approximately 50 microM) produced more binding of CaMBP accompanied by further increase in the badan fluorescence emission but at a longer wavelength (the state resembling CaMBP-badan/apo-CaM) and inhibited Ca2+ release. Binding of CaMBP-badan to R3534-4271 increased the intensity of badan fluorescence, showing the similar concentration-dependent red-shift of the emission maximum. It is proposed that CaMBP interacts with two classes of binding sites located in the Met3534-Ala4271 region of RyR1, which activate and inhibit the Ca2+ channel, respectively.

Indexed as

AnimalsBinding SitesCalciumCalcium SignalingCalmodulinCalmodulin-Binding ProteinsCells, CulturedPeptidesProtein BindingRabbitsRyanodine Receptor Calcium Release ChannelSarcoplasmic ReticulumCalciumCalmodulinCalmodulin-Binding ProteinsPeptidesRyanodine Receptor Calcium Release Channel

Identifiers

PMID16387763
PMCPMC1386780
OpenAlexW1967460749

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.