Evidence map›Paper›PMID 16385002›Full record

ArticleProtein science : a publication of the Protein Society2006

Acid destabilization of the solution conformation of Bcl-xL does not drive its pH-dependent insertion into membranes.

Guruvasuthevan R Thuduppathy, R Blake Hill

Abstract read
In one paragraph

Article in Protein science : a publication of the Protein Society, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Bcl-xL and UVRAG cause a monomer-dimer switch in Beclin1.The Journal of biological chemistry · 2008
    Article
  7. Article
  8. Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Guruvasuthevan R ThuduppathyDepartment of Biology, The Johns Hopkins University, 3400 N. Charles Street, Baltimore, MD 21218, USA.
R Blake Hill

Funding

Structural Biology of Mitochondrial FissionR01GM067180 · NIGMS · MEDICAL COLLEGE OF WISCONSIN · PI HILL, R BLAKE · 2004 to 2022
$6.0M
600 MHZ NMR SPECTROMETER FOR SHARED USE: MOLECULAR BIOLOGYS10RR020922 · NCRR · JOHNS HOPKINS UNIVERSITY · PI HILL, R BLAKE · 2005 to 2005
$500k
NCRR NIH HHS S10 RR020922NIGMS NIH HHS GM067180NIGMS NIH HHS R01 GM067180
6 · The paper itself

Abstract

Regulation of programmed cell death by Bcl-xL is dependent on both its solution and integral membrane conformations. A conformational change from solution to membrane is also important in this regulation. This conformational change shows a pH-dependence similar to the translocation domain of diphtheria toxin, where an acid-induced molten globule conformation in the absence of lipid vesicles mediates the change from solution to membrane conformations. By contrast, Bcl-xL deltaTM in the absence of lipid vesicles exhibits no gross conformational changes upon acidification as observed by near- and far-UV circular dichroism spectropolarimetry. Additionally, no significant local conformational changes upon acidification were observed by heteronuclear NMR spectroscopy of Bcl-xL deltaTM. Under conditions that favor the solution conformation (pH 7.4), the free energy of folding for Bcl-xL deltaTM (deltaG(o)) was determined to be 15.8 kcal x mol(-1). Surprisingly, under conditions that favor a membrane conformation (pH 4.9), deltaG(o) was 14.6 kcal x mol(-1). These results differ from those obtained with many other membrane-insertable proteins where acid-induced destabilization is important. Therefore, other contributions must be necessary to destabilize the solution conformation Bcl-xL and favor the membrane conformation at pH 4.9. Such contributions might include the presence of a negatively charged membrane or an electrostatic potential across the membrane. Thus, for proteins that adopt both solution and membrane conformations, an obligatory molten globule intermediate may not be necessary. The absence of a molten globule intermediate might have evolved to protect Bcl-xL from intracellular proteases as it undergoes this conformational change essential for its activity.

Indexed as

Protein ConformationAcidsbcl-X ProteinCell MembraneCircular DichroismHumansHydrogen-Ion ConcentrationLipid BilayersMagnetic Resonance SpectroscopyProtein DenaturationSolutionsThermodynamicsAcidsbcl-X ProteinLipid BilayersSolutions

Identifiers

PMID16385002
PMCPMC1752203

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.