ArticleNucleic acids research2006
MPromDb: an integrated resource for annotation and visualization of mammalian gene promoters and ChIP-chip experimental data.
Article in Nucleic acids research, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
21 citing papers in PubMed.
- Article
- Understanding Leishmania parasites through proteomics and implications for the clinic.Expert review of proteomics · 2018Review
- Relatively frequent switching of transcription start sites during cerebellar development.BMC genomics · 2017Article
- piRNAQuest: searching the piRNAome for silencers.BMC genomics · 2014Article
- Hypermethylation of the gene LARP2 for noninvasive prenatal diagnosis of β-thalassemia based on DNA methylation profile.Molecular biology reports · 2012Article
- Selective genomic targeting by FRA-2/FOSL2 transcription factor: regulation of the Rgs4 gene is mediated by a variant activator protein 1 (AP-1) promoter sequence/CREB-binding protein (CBP) mechanism.The Journal of biological chemistry · 2011Article
- Transcriptional regulation of mammalian miRNA genes.Genomics · 2011Review
- Genome-wide mapping of RNA Pol-II promoter usage in mouse tissues by ChIP-seq.Nucleic acids research · 2011Article
- Increasing alternative promoter repertories is positively associated with differential expression and disease susceptibility.PloS one · 2010Article
- Annotation of gene promoters by integrative data-mining of ChIP-seq Pol-II enrichment data.BMC bioinformatics · 2010Article
- An integrative ChIP-chip and gene expression profiling to model SMAD regulatory modules.BMC systems biology · 2009Article
- FANTOM4 EdgeExpressDB: an integrated database of promoters, genes, microRNAs, expression dynamics and regulatory interactions.Genome biology · 2009Article
- Studying alternative splicing regulatory networks through partial correlation analysis.Genome biology · 2009Article
- Human and mouse switch-like genes share common transcriptional regulatory mechanisms for bimodality.BMC genomics · 2008Article
- An optimized procedure for the design and evaluation of Ecotilling assays.BMC genomics · 2008Article
- Genome-wide analysis of alternative promoters of human genes using a custom promoter tiling array.BMC genomics · 2008Article
- An ultraconserved Hox-Pbx responsive element resides in the coding sequence of Hoxa2 and is active in rhombomere 4.Nucleic acids research · 2008Article
- Weak correlation between sequence conservation in promoter regions and in protein-coding regions of human-mouse orthologous gene pairs.BMC genomics · 2008Article
- NF-kappaB regulation of YY1 inhibits skeletal myogenesis through transcriptional silencing of myofibrillar genes.Molecular and cellular biology · 2007Article
- A microRNA signature of hypoxia.Molecular and cellular biology · 2007Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
6 authors.
Funding
Abstract
We have developed Mammalian Promoter Database (MPromDb), a novel database that integrates gene promoters with experimentally supported annotation of transcription start sites, cis-regulatory elements, CpG islands and chromatin immunoprecipitation microarray (ChIP-chip) experimental results with intuitively designed presentation. Release 1.0 of MPromDb currently contains 36,407 promoters and first exons (19,170 from human, 15,953 from mouse and 1284 from rat), 3739 transcription factor (TF)-binding sites (2027 from human, 1181 mouse and 531 rat) and 224 TFs with links to PubMed and GenBank references. Target promoters of TFs that have been identified by ChIP-chip assay are integrated into the database. MPromDb serves as a portal for genome-wide promoter analysis of data generated by ChIP-chip experimental studies. MPromDb can be accessed from http://bioinformatics.med.ohio-state.edu/MPromDb.
Indexed as
Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.