ArticleNucleic acids research2006
DBTSS: DataBase of Human Transcription Start Sites, progress report 2006.
Article in Nucleic acids research, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 54 papers.
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Who cites it
54 citing papers in PubMed.
- Nonlinear physics opens a new paradigm for accurate transcription start site prediction.BMC bioinformatics · 2022Article
- Article
- HIF-dependent regulation of AKAP12 (gravin) in the control of human vascular endothelial function.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2014Article
- IN-MACA-MCC: Integrated Multiple Attractor Cellular Automata with Modified Clonal Classifier for Human Protein Coding and Promoter Prediction.Advances in bioinformatics · 2014Article
- Genome-wide analysis of promoters: clustering by alignment and analysis of regular patterns.PloS one · 2014Article
- Vasodilator phosphostimulated protein (VASP) protects endothelial barrier function during hypoxia.Inflammation · 2012Article
- A comparison study on feature selection of DNA structural properties for promoter prediction.BMC bioinformatics · 2012Article
- GPMiner: an integrated system for mining combinatorial cis-regulatory elements in mammalian gene group.BMC genomics · 2012Article
- Profiling ascidian promoters as the primordial type of vertebrate promoter.BMC genomics · 2011Article
- IFN-γ attenuates hypoxia-inducible factor (HIF) activity in intestinal epithelial cells through transcriptional repression of HIF-1β.Journal of immunology (Baltimore, Md. : 1950) · 2011Article
- Cross-species comparison of genomewide gene expression profiles reveals induction of hypoxia-inducible factor-responsive genes in iron-deprived intestinal epithelial cells.American journal of physiology. Cell physiology · 2010Article
- Functional analysis and identification of cis-regulatory elements of human chromosome 21 gene promoters.Nucleic acids research · 2010Article
- Article
- Identifying genes progressively silenced in preneoplastic and neoplastic liver tissues.International journal of computational biology and drug design · 2010Article
- Inflammation-associated repression of vasodilator-stimulated phosphoprotein (VASP) reduces alveolar-capillary barrier function during acute lung injury.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2009Article
- PU.1 can recruit BCL6 to DNA to repress gene expression in germinal center B cells.Molecular and cellular biology · 2009Article
- Growth controls connect: interactions between c-myc and the tuberous sclerosis complex-mTOR pathway.Cell cycle (Georgetown, Tex.) · 2009Review
- Hypoxia-inducible factor-dependent induction of netrin-1 dampens inflammation caused by hypoxia.Nature immunology · 2009Article
- Article
- Profiling the thermodynamic softness of adenoviral promoters.Biophysical journal · 2008Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
6 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
DBTSS was first constructed in 2002 based on precise, experimentally determined 5' end clones. Several major updates and additions have been made since the last report. First, the number of human clones has drastically increased, going from 190,964 to 1,359,000. Second, information about potential alternative promoters is presented because the number of 5' end clones is now sufficient to determine several promoters for one gene. Namely, we defined putative promoter groups by clustering transcription start sites (TSSs) separated by <500 bases. A total of 8308 human genes and 4276 mouse genes were found to have putative multiple promoters. Third, DBTSS provides detailed sequence comparisons of user-specified TSSs. Finally, we have added TSS information for zebrafish, malaria and schyzon (a red algae model organism). DBTSS is accessible at http://dbtss.hgc.jp.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.