ArticleNucleic acids research2006
The TIGR Maize Database.
Article in Nucleic acids research, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.
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Who cites it
22 citing papers in PubMed, 38 citations in OpenAlex.
- Synergizing biotechnology and natural farming: pioneering agricultural sustainability through innovative interventions.Frontiers in plant science · 2024Review
- Finding and Characterizing Repeats in Plant Genomes.Methods in molecular biology (Clifton, N.J.) · 2022Article
- An Overview of Abiotic Stress in Cereal Crops: Negative Impacts, Regulation, Biotechnology and Integrated Omics.Plants (Basel, Switzerland) · 2021Review
- DBETH: a Database of Bacterial Exotoxins for Human.Nucleic acids research · 2012Article
- Choosing a genome browser for a Model Organism Database: surveying the maize community.Database : the journal of biological databases and curation · 2010Article
- Analysis of synonymous codon usage in Zea mays.Molecular biology reports · 2010Article
- Characterization of new maize genes putatively involved in cytokinin metabolism and their expression during osmotic stress in relation to cytokinin levels.Plant physiology · 2009Article
- Advancing cell biology and functional genomics in maize using fluorescent protein-tagged lines.Plant physiology · 2009Article
- The ATG autophagic conjugation system in maize: ATG transcripts and abundance of the ATG8-lipid adduct are regulated by development and nutrient availability.Plant physiology · 2009Article
- Methylation-sensitive linking libraries enhance gene-enriched sequencing of complex genomes and map DNA methylation domains.BMC genomics · 2008Article
- A new method to compute K-mer frequencies and its application to annotate large repetitive plant genomes.BMC genomics · 2008Article
- Discovery and assembly of repeat family pseudomolecules from sparse genomic sequence data using the Assisted Automated Assembler of Repeat Families (AAARF) algorithm.BMC bioinformatics · 2008Article
- Spatial distribution of transcript changes in the maize primary root elongation zone at low water potential.BMC plant biology · 2008Article
- Identification and characterization of lineage-specific genes within the Poaceae.Plant physiology · 2007Article
- Rice pseudomolecule-anchored cross-species DNA sequence alignments indicate regional genomic variation in expressed sequence conservation.BMC genomics · 2007Article
- Improvement of whole-genome annotation of cereals through comparative analyses.Genome research · 2007Article
- A multi-treatment experimental system to examine photosynthetic differentiation in the maize leaf.BMC genomics · 2007Article
- MaizeGDB's new data types, resources and activities.Nucleic acids research · 2007Article
- Partitioning of the maize epigenome by the number of methyl groups on histone H3 lysines 9 and 27.Genetics · 2006Article
- Intron gain and loss in segmentally duplicated genes in rice.Genome biology · 2006Article
Corrections and comments
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Authors and funding
13 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Maize is a staple crop of the grass family and also an excellent model for plant genetics. Owing to the large size and repetitiveness of its genome, we previously investigated two approaches to accelerate gene discovery and genome analysis in maize: methylation filtration and high C(0)t selection. These techniques allow the construction of gene-enriched genomic libraries by minimizing repeat sequences due to either their methylation status or their copy number, yielding a 7-fold enrichment in genic sequences relative to a random genomic library. Approximately 900,000 gene-enriched reads from maize were generated and clustered into Assembled Zea mays (AZM) sequences. Here we report the current AZM release, which consists of approximately 298 Mb representing 243,807 sequence assemblies and singletons. In order to provide a repository of publicly available maize genomic sequences, we have created the TIGR Maize Database (http://maize.tigr.org). In this resource, we have assembled and annotated the AZMs and used available sequenced markers to anchor AZMs to maize chromosomes. We have constructed a maize repeat database and generated draft sequence assemblies of 287 maize bacterial artificial chromosome (BAC) clone sequences, which we annotated along with 172 additional publicly available BAC clones. All sequences, assemblies and annotations are available at the project website via web interfaces and FTP downloads.
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.