ArticleNucleic acids research2006
GOBASE--a database of organelle and bacterial genome information.
Article in Nucleic acids research, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.
What it found
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Who cites it
10 citing papers in PubMed, 22 citations in OpenAlex.
- The evolutionary history of Saccharomyces species inferred from completed mitochondrial genomes and revision in the 'yeast mitochondrial genetic code'.DNA research : an international journal for rapid publication of reports on genes and genomes · 2017Article
- Co-evolution of mitochondrial tRNA import and codon usage determines translational efficiency in the green alga Chlamydomonas.PLoS genetics · 2012Article
- IMGD: an integrated platform supporting comparative genomics and phylogenetics of insect mitochondrial genomes.BMC genomics · 2009Article
- GOBASE: an organelle genome database.Nucleic acids research · 2009Article
- Unassigned MURF1 of kinetoplastids codes for NADH dehydrogenase subunit 2.BMC genomics · 2008Article
- Preparation of yeast mitochondrial DNA for direct sequence analysis.Current genetics · 2008Article
- E-CAI: a novel server to estimate an expected value of Codon Adaptation Index (eCAI).BMC bioinformatics · 2008Article
- Mitome: dynamic and interactive database for comparative mitochondrial genomics in metazoan animals.Nucleic acids research · 2008Article
- REDIdb: the RNA editing database.Nucleic acids research · 2007Article
- Reconstructing the evolution of the mitochondrial ribosomal proteome.Nucleic acids research · 2007Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
7 authors at 1 institution in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The organelle genome database GOBASE is now in its twelfth release, and includes 350,000 mitochondrial sequences and 118,000 chloroplast sequences, roughly a 3-fold expansion since previously documented. GOBASE also includes a fully reannotated genome sequence of Rickettsia prowazekii, one of the closest bacterial relatives of mitochondria, and will shortly expand to contain more data from bacteria from which organelles originated. All these sequences are now accessible through a single unified interface. Enhancements to the functionality of GOBASE include addition of pages for RNA structures and a page compiling data about the taxonomic distribution of organelle-encoded genes; incorporation of Gene Ontology terms; addition of features deduced from incomplete annotations to sequences in GenBank; marking of type examples in cases where single genes in single species are oversampled within GenBank; and addition of graphics illustrating gene structure and the position of neighbouring genes on a sequence. The database has been reimplemented in PostgreSQL to facilitate development and maintenance, and structural modifications have been made to speed up queries, particularly those related to taxonomy. The GOBASE database can be queried at http://gobase.bcm.umontreal.ca/ and inquiries should be directed to gobase@bch.umontreal.ca.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.