ArticleNucleic acids research2006
ChloroplastDB: the Chloroplast Genome Database.
Article in Nucleic acids research, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 47 papers.
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Who cites it
47 citing papers in PubMed.
- Genomic Analysis of Plastid-Nuclear Interactions and Differential Evolution Rates in Coevolved Genes across Juglandaceae Species.Genome biology and evolution · 2023Article
- Characteristics, Comparative Analysis, and Phylogenetic Relationships of Chloroplast Genomes of Cultivars and Wild Relatives of Eggplant (Current issues in molecular biology · 2023Article
- Poaceae Chloroplast Genome Sequencing: Great Leap Forward in Recent Ten Years.Current genomics · 2023Review
- Multi-Omics Approaches and Resources for Systems-Level Gene Function Prediction in the Plant Kingdom.Plants (Basel, Switzerland) · 2022Review
- Article
- Complete chloroplast genome ofMitochondrial DNA. Part B, Resources · 2021Article
- OGDA: a comprehensive organelle genome database for algae.Database : the journal of biological databases and curation · 2020Article
- CpGDB : A Comprehensive Database of Chloroplast Genomes.Bioinformation · 2020Article
- A comparative analysis of complete plastid genomes fromEcology and evolution · 2019Article
- Article
- Comparative analysis of the complete chloroplast genome sequences of six species ofChinese medicine · 2019Article
- Complete chloroplast genome sequence of Dryopteris fragrans (L.) Schott and the repeat structures against the thermal environment.Scientific reports · 2018Article
- Pausing of Chloroplast Ribosomes Is Induced by Multiple Features and Is Linked to the Assembly of Photosynthetic Complexes.Plant physiology · 2018Article
- Gene loss and genome rearrangement in the plastids of five Hemiparasites in the family Orobanchaceae.BMC plant biology · 2018Article
- Microbial Community Structure and Functional Potential Along a Hypersaline Gradient.Frontiers in microbiology · 2018Article
- REDIdb 3.0: A Comprehensive Collection of RNA Editing Events in Plant Organellar Genomes.Frontiers in plant science · 2018Article
- Sequencing and Analysis ofFrontiers in plant science · 2018Article
- Chloroplast Genome Sequence Annotation ofPLoS currents · 2017Article
- Review
- Bioinformatics Approach in Plant Genomic Research.Current genomics · 2016Article
Corrections and comments
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Authors and funding
8 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The Chloroplast Genome Database (ChloroplastDB) is an interactive, web-based database for fully sequenced plastid genomes, containing genomic, protein, DNA and RNA sequences, gene locations, RNA-editing sites, putative protein families and alignments (http://chloroplast.cbio.psu.edu/). With recent technical advances, the rate of generating new organelle genomes has increased dramatically. However, the established ontology for chloroplast genes and gene features has not been uniformly applied to all chloroplast genomes available in the sequence databases. For example, annotations for some published genome sequences have not evolved with gene naming conventions. ChloroplastDB provides unified annotations, gene name search, BLAST and download functions for chloroplast encoded genes and genomic sequences. A user can retrieve all orthologous sequences with one search regardless of gene names in GenBank. This feature alone greatly facilitates comparative research on sequence evolution including changes in gene content, codon usage, gene structure and post-transcriptional modifications such as RNA editing. Orthologous protein sets are classified by TribeMCL and each set is assigned a standard gene name. Over the next few years, as the number of sequenced chloroplast genomes increases rapidly, the tools available in ChloroplastDB will allow researchers to easily identify and compile target data for comparative analysis of chloroplast genes and genomes.
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