ArticleNucleic acids research2006
BodyMap-Xs: anatomical breakdown of 17 million animal ESTs for cross-species comparison of gene expression.
Article in Nucleic acids research, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.
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Who cites it
18 citing papers in PubMed.
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- DESE: estimating driver tissues by selective expression of genes associated with complex diseases or traits.Genome biology · 2019Article
- RefEx, a reference gene expression dataset as a web tool for the functional analysis of genes.Scientific data · 2017Article
- Identifying gene expression modules that define human cell fates.Stem cell research · 2016Article
- In silico screening for palmitoyl substrates reveals a role for DHHC1/3/10 (zDHHC1/3/11)-mediated neurochondrin palmitoylation in its targeting to Rab5-positive endosomes.The Journal of biological chemistry · 2013Article
- Computational solutions for omics data.Nature reviews. Genetics · 2013Review
- Identification of novel tissue-specific genes by analysis of microarray databases: a human and mouse model.PloS one · 2013Article
- Making sense out of massive data by going beyond differential expression.Proceedings of the National Academy of Sciences of the United States of America · 2012Article
- Assessing affymetrix GeneChip microarray quality.BMC bioinformatics · 2011Article
- The Gene Expression Barcode: leveraging public data repositories to begin cataloging the human and murine transcriptomes.Nucleic acids research · 2011Article
- TiSGeD: a database for tissue-specific genes.Bioinformatics (Oxford, England) · 2010Article
- Genomics and bioinformatics resources for crop improvement.Plant & cell physiology · 2010Review
- On theoretical models of gene expression evolution with random genetic drift and natural selection.PloS one · 2009Article
- Gene-L'EXPO: a tool to extract knowledge From transcriptomes and find 'Literature-Sparse' relationships between genes and tissues.AMIA ... Annual Symposium proceedings. AMIA Symposium · 2008Article
- Prediction of human miRNAs using tissue-selective motifs in 3' UTRs.Proceedings of the National Academy of Sciences of the United States of America · 2008Article
- Genetic analysis of chromosome 20-related posterior polymorphous corneal dystrophy: genetic heterogeneity and exclusion of three candidate genes.Molecular vision · 2008Article
- Do Alu repeats drive the evolution of the primate transcriptome?Genome biology · 2008Article
- NATsDB: Natural Antisense Transcripts DataBase.Nucleic acids research · 2007Article
Corrections and comments
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Authors and funding
8 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
BodyMap-Xs (http://bodymap.jp) is a database for cross-species gene expression comparison. It was created by the anatomical breakdown of 17 million animal expressed sequence tag (EST) records in DDBJ using a sorting program tailored for this purpose. In BodyMap-Xs, users are allowed to compare the expression patterns of orthologous and paralogous genes in a coherent manner. This will provide valuable insights for the evolutionary study of gene expression and identification of a responsive motif for a particular expression pattern. In addition, starting from a concise overview of the taxonomical and anatomical breakdown of all animal ESTs, users can navigate to obtain gene expression ranking of a particular tissue in a particular animal. This method may lead to the understanding of the similarities and differences between the homologous tissues across animal species. BodyMap-Xs will be automatically updated in synchronization with the major update in DDBJ, which occurs periodically.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.