ArticleNucleic acids research2006
WormBase: better software, richer content.
Article in Nucleic acids research, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 45 papers.
What it found
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
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Who cites it
45 citing papers in PubMed.
- Article
- Coenzyme Q regulates the expression of essential genes of the pathogen- and xenobiotic-associated defense pathway in C. elegans.Journal of clinical biochemistry and nutrition · 2015Article
- Spatiotemporal transcriptomics reveals the evolutionary history of the endoderm germ layer.Nature · 2015Article
- Potential conservation of circadian clock proteins in the phylum Nematoda as revealed by bioinformatic searches.PloS one · 2014Article
- Article
- SH3 interactome conserves general function over specific form.Molecular systems biology · 2013Article
- Genome-scale studies of aging: challenges and opportunities.Current genomics · 2012Article
- A UPR-independent infection-specific role for a BiP/GRP78 protein in the control of antimicrobial peptide expression in C. elegans epidermis.Virulence · 2012Article
- A genome-wide collection of Mos1 transposon insertion mutants for the C. elegans research community.PloS one · 2012Article
- Approaches to Fungal Genome Annotation.Mycology · 2011Article
- Using C. elegans for antimicrobial drug discovery.Expert opinion on drug discovery · 2011Article
- Major prospects for exploring canine vector borne diseases and novel intervention methods using 'omic technologies.Parasites & vectors · 2011Review
- A comprehensive analysis of gene expression changes provoked by bacterial and fungal infection in C. elegans.PloS one · 2011Article
- Systems vaccinology.Immunity · 2010Review
- Coordinate regulation of gene expression in the C. elegans excretory cell by the POU domain protein CEH-6.Molecular genetics and genomics : MGG · 2010Article
- Condition-adapted stress and longevity gene regulation by Caenorhabditis elegans SKN-1/Nrf.Aging cell · 2009Article
- Interspecies data mining to predict novel ING-protein interactions in human.BMC genomics · 2008Article
- Exploring the transcriptome of the burrowing nematode Radopholus similis.Molecular genetics and genomics : MGG · 2008Article
- Identification of direct target genes using joint sequence and expression likelihood with application to DAF-16.PloS one · 2008Article
- Article
Corrections and comments
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Authors and funding
30 authors.
Funding
Abstract
WormBase (http://wormbase.org), the public database for genomics and biology of Caenorhabditis elegans, has been restructured for stronger performance and expanded for richer biological content. Performance was improved by accelerating the loading of central data pages such as the omnibus Gene page, by rationalizing internal data structures and software for greater portability, and by making the Genome Browser highly customizable in how it views and exports genomic subsequences. Arbitrarily complex, user-specified queries are now possible through Textpresso (for all available literature) and through WormMart (for most genomic data). Biological content was enriched by reconciling all available cDNA and expressed sequence tag data with gene predictions, clarifying single nucleotide polymorphism and RNAi sites, and summarizing known functions for most genes studied in this organism.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.