ArticleNucleic acids research2006
LOCATE: a mouse protein subcellular localization database.
Article in Nucleic acids research, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.
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Who cites it
34 citing papers in PubMed.
- SPIDER: constructing cell-type-specific protein-protein interaction networks.Bioinformatics advances · 2024Article
- A review from biological mapping to computation-based subcellular localization.Molecular therapy. Nucleic acids · 2023Review
- The mitochondrial protein PGAM5 suppresses energy consumption in brown adipocytes by repressing expression of uncoupling protein 1.The Journal of biological chemistry · 2020Article
- Systems biology of facial development: contributions of ectoderm and mesenchyme.Developmental biology · 2017Article
- Integrated analysis of proteome, phosphotyrosine-proteome, tyrosine-kinome, and tyrosine-phosphatome in acute myeloid leukemia.Proteomics · 2017Article
- Texture Descriptors Ensembles Enable Image-Based Classification of Maturation of Human Stem Cell-Derived Retinal Pigmented Epithelium.PloS one · 2016Article
- Sculpting MHC class II-restricted self and non-self peptidome by the class I Ag-processing machinery and its impact on Th-cell responses.European journal of immunology · 2013Article
- Automated protein subcellular localization based on local invariant features.The protein journal · 2013Article
- Article
- Identification and analysis of biomarkers for mismatch repair proteins: A bioinformatic approach.Journal of natural science, biology, and medicine · 2012Article
- Proteomic analysis of metabolic, cytoskeletal and stress response proteins in human heart failure.Journal of cellular and molecular medicine · 2012Article
- Identification of CrkL-SH3 binding proteins from embryonic murine brain: implications for Reelin signaling during brain development.Journal of proteome research · 2011Article
- A testis-specific regulator of complex and hybrid N-glycan synthesis.The Journal of cell biology · 2010Article
- A screen for endocytic motifs.Traffic (Copenhagen, Denmark) · 2010Article
- The proteins of intra-nuclear bodies: a data-driven analysis of sequence, interaction and expression.BMC systems biology · 2010Article
- BayesMotif: de novo protein sorting motif discovery from impure datasets.BMC bioinformatics · 2010Article
- Lipase maturation factor LMF1, membrane topology and interaction with lipase proteins in the endoplasmic reticulum.The Journal of biological chemistry · 2009Article
- Protein-protein interaction as a predictor of subcellular location.BMC systems biology · 2009Article
- Genome-wide analysis of cancer/testis gene expression.Proceedings of the National Academy of Sciences of the United States of America · 2008Article
- The mannose 6-phosphate glycoprotein proteome.Journal of proteome research · 2008Article
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Authors and funding
11 authors.
Funding
Abstract
We present here LOCATE, a curated, web-accessible database that houses data describing the membrane organization and subcellular localization of proteins from the FANTOM3 Isoform Protein Sequence set. Membrane organization is predicted by the high-throughput, computational pipeline MemO. The subcellular locations of selected proteins from this set were determined by a high-throughput, immunofluorescence-based assay and by manually reviewing >1700 peer-reviewed publications. LOCATE represents the first effort to catalogue the experimentally verified subcellular location and membrane organization of mammalian proteins using a high-throughput approach and provides localization data for approximately 40% of the mouse proteome. It is available at http://locate.imb.uq.edu.au.
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