ArticleNucleic acids research2006
TiProD: the Tissue-specific Promoter Database.
Article in Nucleic acids research, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers, 1 of them a synthesis that pooled it.
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Who cites it
16 citing papers in PubMed, 1 synthesis or guideline pooled it.
- Meta-coexpression conservation analysis of microarray data: a "subset" approach provides insight into brain-derived neurotrophic factor regulation.BMC genomics · 2009Pooled it
- Efficient kidney gene transfer and proximal tubule transduction using self-complementary AAV.cc47 vectors.Molecular therapy. Methods & clinical development · 2025Article
- Computational methods for identifying enhancer-promoter interactions.Quantitative biology (Beijing, China) · 2023Review
- Engineering highly efficient backsplicing and translation of synthetic circRNAs.Molecular therapy. Nucleic acids · 2021Article
- In vivo Application of the REMOTE-control System for the Manipulation of Endogenous Gene Expression.Journal of visualized experiments : JoVE · 2019Article
- Multiplexed and programmable regulation of gene networks with an integrated RNA and CRISPR/Cas toolkit in human cells.Molecular cell · 2014Article
- Generation of a tumor- and tissue-specific episomal non-viral vector system.BMC biotechnology · 2013Article
- Sequence signatures extracted from proximal promoters can be used to predict distal enhancers.Genome biology · 2013Article
- Creating PWMs of transcription factors using 3D structure-based computation of protein-DNA free binding energies.BMC bioinformatics · 2010Article
- Gene therapy of benign gynecological diseases.Advanced drug delivery reviews · 2009Review
- AthaMap, integrating transcriptional and post-transcriptional data.Nucleic acids research · 2009Article
- Evaluation of promoters for use in tissue-specific gene delivery.Methods in molecular biology (Clifton, N.J.) · 2008Article
- Genome wide prediction of HNF4alpha functional binding sites by the use of local and global sequence context.Genome biology · 2008Article
- Integrative content-driven concepts for bioinformatics "beyond the cell".Journal of biosciences · 2007Article
- Beyond microarrays: find key transcription factors controlling signal transduction pathways.BMC bioinformatics · 2006Article
- TRANSFAC and its module TRANSCompel: transcriptional gene regulation in eukaryotes.Nucleic acids research · 2006Article
Corrections and comments
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Authors and funding
5 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
TiProD is a database of human promoter sequences for which some functional features are known. It allows a user to query individual promoters and the expression pattern they mediate, gene expression signatures of individual tissues, and to retrieve sets of promoters according to their tissue-specific activity or according to individual Gene Ontology terms the corresponding genes are assigned to. We have defined a measure for tissue-specificity that allows the user to discriminate between ubiquitously and specifically expressed genes. The database is accessible at http://tiprod.cbi.pku.edu.cn:8080/index.html.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.