Evidence map›Paper›PMID 16380913›Full record

ArticleAmerican journal of human genetics2005

Comparative genomics and gene expression analysis identifies BBS9, a new Bardet-Biedl syndrome gene.

Darryl Y Nishimura, Ruth E Swiderski, Charles C Searby, Erik M Berg, Amanda L Ferguson, Raoul Hennekam, Saul Merin, Richard G Weleber, Leslie G Biesecker, Edwin M Stone and 1 more

Open access · bronzeAbstract readComparative Study
In one paragraph

Article in American journal of human genetics, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 89 papers.

0numbers the graph read from it
0cells of the map it votes in
89citing papers in PubMed
12.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

89 citing papers in PubMed, 214 citations in OpenAlex.

  1. Review
  2. Ciliary Defects in Inherited Retinal Diseases.Advanced genetics (Hoboken, N.J.) · 2026
    Review
  3. Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. Review
  10. Kinase Inhibitors in Genetic Diseases.International journal of molecular sciences · 2023
    Review
  11. Article
  12. Article
  13. AnNAR genomics and bioinformatics · 2022
    Article
  14. Gene therapy rescues olfactory perception in a clinically relevant ciliopathy model of Bardet-Biedl syndrome.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2021
    Article
  15. Article
  16. Article
  17. Article
  18. Novel Compound HeterozygousJournal of ophthalmology · 2021
    Article
  19. Article
  20. Article

29 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 6 institutions in 3 countries.

Darryl Y NishimuraDepartment of Pediatrics, University of Iowa, Iowa City, IA 52242, USA.
Ruth E Swiderski
Charles C Searby
Erik M Berg
Amanda L Ferguson
Raoul Hennekam
Saul Merin
Richard G Weleber
Leslie G Biesecker
Edwin M Stone
Val C Sheffield
University of Iowa · USHoward Hughes Medical Institute · USHadassah Medical Center · ILNational Health Service · GBNational Human Genome Research Institute · USOregon Health & Science University · US

Funding

Rare & Mosaic Disorders Molecular ResearchZIAHG200328 · NHGRI · NATIONAL HUMAN GENOME RESEARCH INSTITUTE · PI BIESECKER, LESLIE · 2009 to 2025
$26.8M
Sympathetic and vascular control in genetic obesityP50HL055006 · NHLBI · UNIVERSITY OF IOWA · PI SHEFFIELD, VAL C · 1996 to 2005
$12.5M
Treatment of a Complex Retinal Degenerative SyndromeR01EY011298 · NEI · UNIVERSITY OF IOWA · PI SHEFFIELD, VAL C. · 1996 to 2017
$7.3M
Clinical and Molecular Studies of MalformationsZ01HG200328 · NHGRI · NATIONAL HUMAN GENOME RESEARCH INSTITUTE · PI BIESECKER, LESLIE G · 2005 to 2008
$5.5M
NEI NIH HHS R01 EY011298NEI NIH HHS R01-EY-11298NHLBI NIH HHS P50 HL055006NHLBI NIH HHS P50-HL-55006
6 · The paper itself

Abstract

Bardet-Biedl syndrome (BBS) is an autosomal recessive, genetically heterogeneous, pleiotropic human disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Eight BBS genes representing all known mapped loci have been identified. Mutation analysis of the known BBS genes in BBS patients indicate that additional BBS genes exist and/or that unidentified mutations exist in the known genes. To identify new BBS genes, we performed homozygosity mapping of small, consanguineous BBS pedigrees, using moderately dense SNP arrays. A bioinformatics approach combining comparative genomic analysis and gene expression studies of a BBS-knockout mouse model was used to prioritize BBS candidate genes within the newly identified loci for mutation screening. By use of this strategy, parathyroid hormone-responsive gene B1 (B1) was found to be a novel BBS gene (BBS9), supported by the identification of homozygous mutations in BBS patients. The identification of BBS9 illustrates the power of using a combination of comparative genomic analysis, gene expression studies, and homozygosity mapping with SNP arrays in small, consanguineous families for the identification of rare autosomal recessive disorders. We also demonstrate that small, consanguineous families are useful in identifying intragenic deletions. This type of mutation is likely to be underreported because of the difficulty of deletion detection in the heterozygous state by the mutation screening methods that are used in many studies.

Indexed as

Gene ExpressionGenes, RecessiveGenomicsAllelesAlu ElementsBardet-Biedl SyndromeBase SequenceChromosome MappingComputational BiologyConsanguinityCytoskeletal ProteinsDNA Mutational AnalysisFemaleGene DeletionHomozygoteHumansBBS9 protein, humanCytoskeletal ProteinsNeoplasm Proteins

Identifiers

PMID16380913
PMCPMC1285160
OpenAlexW2107555330

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.