Evidence map›Paper›PMID 16379007›Full record

ArticleJournal of virology2006

Longitudinal analysis of human immunodeficiency virus type 1 nef/long terminal repeat sequences in a cohort of long-term survivors infected from a single source.

Melissa J Churchill, David I Rhodes, Jennifer C Learmont, John S Sullivan, Steven L Wesselingh, Ian R C Cooke, Nicholas J Deacon, Paul R Gorry

Abstract read
In one paragraph

Article in Journal of virology, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed.

  1. Article
  2. The HIV reservoir landscape in elite controllers.Current opinion in HIV and AIDS · 2026
    Review
  3. Review
  4. Article
  5. Korean Red Ginseng increases defectiveJournal of ginseng research · 2019
    Article
  6. Possible clearance of transfusion-acquiredJournal of virus eradication · 2019
    Article
  7. Article
  8. Article
  9. Review
  10. Review
  11. Article
  12. Review
  13. Article
  14. Article
  15. Animal models for depression associated with HIV-1 infection.Journal of neuroimmune pharmacology : the official journal of the Society on NeuroImmune Pharmacology · 2014
    Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Melissa J ChurchillMacfarlane Burnet Institute for Medical Research and Public Health, GPO Box 2284, Melbourne 3001, Victoria, Australia.
David I Rhodes
Jennifer C Learmont
John S Sullivan
Steven L Wesselingh
Ian R C Cooke
Nicholas J Deacon
Paul R Gorry

Funding

Pathogenesis of Macrophage Tropic HIV-1R21AI054207 · NIAID · MACFARLANE BURNET INST FOR RES/PUB HLTH · PI GORRY, PAUL R · 2003 to 2004
$324k
NIAID NIH HHS 1-R21-AI054207-01-A1NIAID NIH HHS R21 AI054207
6 · The paper itself

Abstract

We studied the evolution of human immunodeficiency virus type 1 (HIV-1) in a cohort of long-term survivors infected with an attenuated strain of HIV-1 acquired from a single source. Although the cohort members experienced differing clinical courses, we demonstrate similar evolution of HIV-1 nef/long-terminal repeat (LTR) sequences, characterized by progressive sequence deletions tending toward a minimal nef/LTR structure that retains only sequence elements required for viral replication. The in vivo pathogenicity of attenuated HIV-1 is therefore dictated by viral and/or host factors other than those that impose a unidirectional selection pressure on the nef/LTR region of the HIV-1 genome.

Indexed as

Adaptation, PhysiologicalAgedCohort StudiesFemaleGene DeletionGene Products, nefHIV-1HIV InfectionsHIV Long Terminal RepeatHumansMaleMiddle AgedMolecular Sequence Datanef Gene Products, Human Immunodeficiency VirusSequence AnalysisGene Products, nefnef Gene Products, Human Immunodeficiency Virus

Identifiers

PMID16379007
PMCPMC1346882

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.