Evidence map›Paper›PMID 16373497›Full record

ArticleRNA (New York, N.Y.)2006

Non-snRNP U1A levels decrease during mammalian B-cell differentiation and release the IgM secretory poly(A) site from repression.

Jianglin Ma, Samuel I Gunderson, Catherine Phillips

Open access · bronzeAbstract read
In one paragraph

Article in RNA (New York, N.Y.), 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
0.9field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 29 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Linking Endoplasmic Reticular Stress and Alternative Splicing.International journal of molecular sciences · 2018
    Review
  5. Article
  6. Article
  7. Review
  8. The reciprocal regulation between splicing and 3'-end processing.Wiley interdisciplinary reviews. RNA · 2016
    Review
  9. Article
  10. Article
  11. Review
  12. Article
  13. Review
  14. Article
  15. Review
  16. Article
  17. Article
  18. Review
  19. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Jianglin MaRutgers University, Department of Molecular Biology and Biochemistry, Nelson Laboratories, Room A322, 604 Allison Road, Piscataway, NJ 08854, USA.
Samuel I Gunderson
Catherine Phillips
Rutgers, The State University of New Jersey · USNelson Engineering (United States) · US

Funding

Regulation of Polyadenylation: the U1A/U1snRNP ParadigmR01GM057286 · NIGMS · RUTGERS THE ST UNIV OF NJ NEW BRUNSWICK · PI GUNDERSON, SAMUEL I · 1999 to 2007
$2.9M
NIGMS NIH HHS GM57286NIGMS NIH HHS R01 GM057286
6 · The paper itself

Abstract

A regulated shift from the production of membrane to secretory forms of Immunoglobulin M (IgM) mRNA occurs during B cell differentiation due to the activation of an upstream secretory poly(A) site. U1A plays a key role in inhibiting the expression of the secretory poly(A) site by inhibiting both cleavage at the poly(A) site and subsequent poly(A) tail addition. However, how the inhibitory effect of U1A is alleviated in differentiated cells, which express the secretory poly(A) site, is not known. Using B cell lines representing different stages of B cell differentiation, we show that the amount of U1A available to inhibit the secretory poly(A) site is reduced in differentiated cells. Undifferentiated B cells have more total U1A than differentiated cells and a greater proportion of this is not associated with the U1snRNP. We show that this is available to inhibit poly(A) addition at the secretory poly(A) site using cold competitor RNA oligos to de-repress poly(A) addition in nuclear extracts from the respective cell lines. In addition, endogenous non-snRNP associated U1A-immunopurified from the different cell lines-inhibits poly(A) polymerase activity proportional to U1A recovered, suggesting that available U1A level alone is responsible for changes in its inhibitory effect at the secretory IgM poly (A) site.

Indexed as

AnimalsB-LymphocytesCell DifferentiationCell LineHeLa CellsHumansImmunoglobulin MMiceModels, BiologicalPolyadenylationRibonucleoproteins, Small NuclearRibonucleoprotein, U1 Small NuclearRNA-Binding ProteinsRNA, MessengerRNA PrecursorsRNA, Small NuclearImmunoglobulin MRibonucleoproteins, Small NuclearRibonucleoprotein, U1 Small NuclearRNA-Binding ProteinsRNA, MessengerRNA PrecursorsRNA, Small Nuclearsecretory IgMSNRNP70 protein, humanU1A proteinU1 small nuclear RNA

Identifiers

PMID16373497
PMCPMC1370892
OpenAlexW2074263966

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.