ArticleFunctional & integrative genomics2006
Macro- and microcolinearity between the genomic region of wheat chromosome 5B containing the Tsn1 gene and the rice genome.
Article in Functional & integrative genomics, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.
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Who cites it
15 citing papers in PubMed, 43 citations in OpenAlex.
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- Genome-wide polymorphisms from RNA sequencing assembly of leaf transcripts facilitate phylogenetic analysis and molecular marker development in wild einkorn wheat.Molecular genetics and genomics : MGG · 2019Article
- New Insights into the Roles of Host Gene-Necrotrophic Effector Interactions in Governing Susceptibility of Durum Wheat to Tan Spot and Septoria nodorum Blotch.G3 (Bethesda, Md.) · 2016Article
- Crossability of Triticum urartu and Triticum monococcum wheats, homoeologous recombination, and description of a panel of interspecific introgression lines.G3 (Bethesda, Md.) · 2014Article
- Genetics of tan spot resistance in wheat.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2013Review
- Comparative high-resolution mapping of the wax inhibitors Iw1 and Iw2 in hexaploid wheat.PloS one · 2013Article
- Targeted mapping of Cdu1, a major locus regulating grain cadmium concentration in durum wheat (Triticum turgidum L. var durum).TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2010Article
- A unique wheat disease resistance-like gene governs effector-triggered susceptibility to necrotrophic pathogens.Proceedings of the National Academy of Sciences of the United States of America · 2010Article
- Delineating the structural, functional and evolutionary relationships of sucrose phosphate synthase gene family II in wheat and related grasses.BMC plant biology · 2010Article
- Genetic analysis of disease susceptibility contributed by the compatible Tsn1-SnToxA and Snn1-SnTox1 interactions in the wheat-Stagonospora nodorum pathosystem.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2010Article
- Synteny mapping between common bean and soybean reveals extensive blocks of shared loci.BMC genomics · 2010Article
- Duplication of a well-conserved homeodomain-leucine zipper transcription factor gene in barley generates a copy with more specific functions.Functional & integrative genomics · 2010Article
- Identification and characterization of a novel host-toxin interaction in the wheat-Stagonospora nodorum pathosystem.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2009Article
- Micro-colinearity between rice, Brachypodium, and Triticum monococcum at the wheat domestication locus Q.Functional & integrative genomics · 2008Article
- Single-copy genes define a conserved order between rice and wheat for understanding differences caused by duplication, deletion, and transposition of genes.Functional & integrative genomics · 2007Article
Corrections and comments
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Authors and funding
2 authors at 2 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The Tsn1 gene in wheat confers sensitivity to a proteinaceous host-selective toxin (Ptr ToxA) produced by the tan spot fungus (Pyrenophora tritici-repentis) and lies within a gene-rich region of chromosome 5B. To use the rice genome sequence information for the map-based cloning of Tsn1, colinearity between the wheat genomic region containing Tsn1 and the rice genome was determined at the macro- and microlevels. Macrocolinearity was determined by testing 28 expressed sequence markers (ESMs) spanning a 25.5-cM segment and encompassing Tsn1 for similarity to rice sequences. Twelve ESMs had no similarity to rice sequences, and 16 had similarity to sequences on seven different rice chromosomes. Segments of colinearity with rice chromosomes 3 and 9 were identified, but frequent rearrangements and disruptions occurred. Microcolinearity was determined by testing the sequences of 26 putative genes identified from BAC contigs of 205 and 548 kb in length and flanking Tsn1 for similarity to rice genomic sequences. Fourteen of the predicted genes detected orthologous sequences on six different rice chromosomes, whereas the remaining 12 had no similarity with rice sequences. Four genes were colinear on rice chromosome 9, but multiple disruptions, rearrangements, and duplications were observed in wheat relative to rice. The data reported provide a detailed analysis of a region of wheat chromosome 5B that is highly rearranged relative to rice.
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