Evidence map›Paper›PMID 16369001›Full record

ArticleInfection and immunity2006

Identification and characterization of the capsular polysaccharide (K-antigen) locus of Porphyromonas gingivalis.

Joseph Aduse-Opoku, Jennifer M Slaney, Ahmed Hashim, Alexandra Gallagher, Robert P Gallagher, Minnie Rangarajan, Khalil Boutaga, Marja L Laine, Arie J Van Winkelhoff, Michael A Curtis

Open access · bronzeAbstract read
In one paragraph

Article in Infection and immunity, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 57 papers.

0numbers the graph read from it
0cells of the map it votes in
57citing papers in PubMed
3.6field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

57 citing papers in PubMed, 90 citations in OpenAlex.

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  15. AFrontiers in oral health · 2021
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  16. Journal of dental research · 2020
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  17. TheJournal of dental research · 2020
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  18. Roles of Porphyromonas gingivalis and its virulence factors in periodontitis.Advances in protein chemistry and structural biology · 2020
    Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 2 countries.

Joseph Aduse-OpokuMRC Molecular Pathogenesis Group, Centre for Infectious Disease, Institute of Cell and Molecular Science, Queen Mary's School of Medicine and Dentistry, 4 Newark Street, London E1 2AT, United Kingdom.
Jennifer M Slaney
Ahmed Hashim
Alexandra Gallagher
Robert P Gallagher
Minnie Rangarajan
Khalil Boutaga
Marja L Laine
Arie J Van Winkelhoff
Michael A Curtis
Queen Mary University of London · GBUniversity of Amsterdam · NLAcademic Center for Dentistry Amsterdam · NL

Funding

Wellcome Trust
6 · The paper itself

Abstract

Capsular polysaccharides of gram-negative bacteria play an important role in maintaining the structural integrity of the cell in hostile environments and, because of their diversity within a given species, can act as useful taxonomic aids. In order to characterize the genetic locus for capsule biosynthesis in the oral gram-negative bacterium Porphyromonas gingivalis, we analyzed the genome of P. gingivalis W83 which revealed two candidate loci at PG0106-PG0120 and PG1135-PG1142 with sufficient coding capacity and appropriate gene functions based on comparisons with capsule-coding loci in other bacteria. Insertion and deletion mutants were prepared at PG0106-PG0120 in P. gingivalis W50-a K1 serotype. Deletion of PG0109-PG0118 and PG0116-PG0120 both yielded mutants which no longer reacted with antisera to K1 serotypes. Restriction fragment length polymorphism analysis of the locus in strains representing all six K-antigen serotypes and K(-) strains demonstrated significant variation between serotypes and limited conservation within serotypes. In contrast, PG1135-PG1142 was highly conserved in this collection of strains. Sequence analysis of the capsule locus in strain 381 (K(-) strain) demonstrated synteny with the W83 locus but also significant differences including replacement of PG0109-PG0110 with three unique open reading frames, deletion of PG0112-PG0114, and an internal termination codon within PG0106, each of which could contribute to the absence of capsule expression in this strain. Analysis of the Arg-gingipains in the capsule mutants of strain W50 revealed no significant changes to the glycan modifications of these enzymes, which indicates that the glycosylation apparatus in P. gingivalis is independent of the capsule biosynthetic machinery.

Indexed as

Adhesins, BacterialAntigens, BacterialAntigens, SurfaceBacterial CapsulesComputational BiologyCysteine EndopeptidasesGenetic MarkersGingipain Cysteine EndopeptidasesGlycosylationMolecular Sequence DataMutationPorphyromonas gingivalisSequence Analysis, DNASerotypingAdhesins, BacterialAntigens, BacterialAntigens, SurfaceCysteine EndopeptidasesGenetic MarkersGingipain Cysteine EndopeptidasesK antigens

Identifiers

PMID16369001
PMCPMC1346596
OpenAlexW2025937246

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.