Evidence map›Paper›PMID 16365162›Full record

ArticleThe Journal of cell biology2005

The mobile nucleoporin Nup2p and chromatin-bound Prp20p function in endogenous NPC-mediated transcriptional control.

David J Dilworth, Alan J Tackett, Richard S Rogers, Eugene C Yi, Rowan H Christmas, Jennifer J Smith, Andrew F Siegel, Brian T Chait, Richard W Wozniak, John D Aitchison

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of cell biology, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 73 papers.

0numbers the graph read from it
0cells of the map it votes in
73citing papers in PubMed
3.2field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

73 citing papers in PubMed, 117 citations in OpenAlex.

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  19. Roles for Non-coding RNAs in Spatial Genome Organization.Frontiers in cell and developmental biology · 2019
    Review
  20. Article

13 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 2 countries.

David J DilworthInstitute for Systems Biology, Seattle, WA 98103, USA.
Alan J Tackett
Richard S Rogers
Eugene C Yi
Rowan H Christmas
Jennifer J Smith
Andrew F Siegel
Brian T Chait
Richard W Wozniak
John D Aitchison
Institute for Systems Biology · USRockefeller University · USUniversity of Alberta · CA

Funding

NEW TOOLS FOR EXPLORING THE DYNAMIC INTERACTOME(RMI)U54RR022220 · NCRR · ROCKEFELLER UNIVERSITY · PI ROUT, MICHAEL P · 2005 to 2011
$19.3M
YNG1 PHD BINDING TO H3 3METHYL AT K4 PROMOTES TRANSCRIPTION AT TARGETED ORFSP41RR000862 · NCRR · ROCKEFELLER UNIVERSITY · PI DARNELL, JAMES E · 1985 to 2011
$16.1M
Analysis of Telomeric Proteins Using Mass SpectrometryF32GM066496 · NIGMS · ROCKEFELLER UNIVERSITY · PI TACKETT, ALAN JACKSON · 2002 to 2004
$125k
NCRR NIH HHS P41 RR000862NCRR NIH HHS RR00862NCRR NIH HHS RR022220NCRR NIH HHS U54 RR022220NIGMS NIH HHS F32 GM066496NIGMS NIH HHS GM066496
6 · The paper itself

Abstract

Nuclear pore complexes (NPCs) govern macromolecular transport between the nucleus and cytoplasm and serve as key positional markers within the nucleus. Several protein components of yeast NPCs have been implicated in the epigenetic control of gene expression. Among these, Nup2p is unique as it transiently associates with NPCs and, when artificially tethered to DNA, can prevent the spread of transcriptional activation or repression between flanking genes, a function termed boundary activity. To understand this function of Nup2p, we investigated the interactions of Nup2p with other proteins and with DNA using immunopurifications coupled with mass spectrometry and microarray analyses. These data combined with functional assays of boundary activity and epigenetic variegation suggest that Nup2p and the Ran guanylyl-nucleotide exchange factor, Prp20p, interact at specific chromatin regions and enable the NPC to play an active role in chromatin organization by facilitating the transition of chromatin between activity states.

Indexed as

Active Transport, Cell NucleusChromatinDNA-Binding ProteinsGene SilencingGuanine Nucleotide Exchange FactorsHistonesMicroarray AnalysisModels, BiologicalNuclear PoreNuclear Pore Complex ProteinsNuclear ProteinsNucleosomesOpen Reading FramesSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsTelomereChromatinDNA-Binding ProteinsGuanine Nucleotide Exchange FactorsHistonesHtz1 protein, S cerevisiaeNuclear Pore Complex ProteinsNuclear ProteinsNucleosomesNUP2 protein, S cerevisiaeNup60 protein, S cerevisiaeSaccharomyces cerevisiae ProteinsSRM1 protein, S cerevisiae

Identifiers

PMID16365162
PMCPMC2171315
OpenAlexW2100045646

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.