Evidence map›Paper›PMID 16362275›Full record

ArticleTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik2006

Identification of Glu-B1-1 as a candidate gene for the quantity of high-molecular-weight glutenin in bread wheat (Triticum aestivum L.) by means of an association study.

Catherine Ravel, Sébastien Praud, Alain Murigneux, Laurent Linossier, Mireille Dardevet, François Balfourier, Philippe Dufour, Dominique Brunel, Gilles Charmet

Abstract readComparative Study
PubMed Publisher
In one paragraph

Article in TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
6.6field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 67 citations in OpenAlex.

  1. Review
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  10. Genome-wide association analysis to identify chromosomal regions determining components of earliness in wheat.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2012
    Article
  11. QTL mapping for quantities of protein fractions in bread wheat (Triticum aestivum L.).TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2011
    Article
  12. Article
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  18. FT genome A and D polymorphisms are associated with the variation of earliness components in hexaploid wheat.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2008
    Article
  19. Article
  20. Wheat genomics: present status and future prospects.International journal of plant genomics · 2008
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 5 institutions in 2 countries.

Catherine RavelAmélioration et Santé des Plantes (UMR 1095), 63100, Clermont-Ferrand, France. ravel@clermont.inra.fr
Sébastien Praud
Alain Murigneux
Laurent Linossier
Mireille Dardevet
François Balfourier
Philippe Dufour
Dominique Brunel
Gilles Charmet
Biogemma (France) · FRDépartement Biologie et Amélioration des Plantes · FRCentre National de Recherche en Génomique Humaine · FRDépartement Santé des Plantes et Environnement · FRLeonardo (France) · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A previous study in wheat (Triticum aestivum L.) identified two candidate genes controlling a quantitative trait locus (QTL) for high-molecular-weight glutenin subunit (HMW-GS) GluBx. These candidates were Glu-B1-1, the structural gene coding for Glu1Bx, and the B homoeologous gene coding for SPA (spa-B), a seed storage protein activator. The goal of this study was to identify the best candidate gene for this QTL. Single nucleotide polymorphisms (SNPs) are an abundant source of DNA polymorphisms that have been successfully used to identify loci associated with particular phenotypes. As no linkage disequilibrium was detected between Glu-B1-1 and spa-B, we performed an association study to identify the individual gene responsible for the QTL. Six SNPs, three located in Glu-B1-1 and three in spa-B, were genotyped by mass spectrometry in a collection of 113 bread wheat lines. These lines were also evaluated for protein content as well as the total quantity of HMW-GSs and of each HMW-GS in seed samples from two harvest years. Significant associations were detected only between Glu-B1-1 polymorphism and most of the traits evaluated. Spa-B was unambiguously discarded as a candidate. To our knowledge, this is the first report on an association study that was successfully used to discriminate between two candidate genes.

Indexed as

Genes, PlantPolymorphism, Single NucleotideQuantitative Trait LociDNA, PlantGenetic LinkageGenotypeGlutensMass SpectrometryMolecular WeightTriticumDNA, PlantgluteninGlutens

Identifiers

PMID16362275
OpenAlexW2050078018

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.